STRINGSTRING
Ddes_1514 Ddes_1514 Ddes_1513 Ddes_1513 Ddes_1515 Ddes_1515 Ddes_0797 Ddes_0797 Ddes_0989 Ddes_0989 Ddes_0798 Ddes_0798 Ddes_0991 Ddes_0991 Ddes_1512 Ddes_1512 Ddes_1511 Ddes_1511 Ddes_1516 Ddes_1516 Ddes_2207 Ddes_2207
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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Gene Fusion
Cooccurrence
Coexpression
Experiments
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[Homology]
Score
Ddes_1514PFAM: transport system permease protein; KEGG: nha:Nham_0954 transport system permease protein; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily. (335 aa)    
Predicted Functional Partners:
Ddes_1513
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sfu:Sfum_3704 ABC transporter related.
 
 
 0.985
Ddes_1515
PFAM: periplasmic binding protein; KEGG: sfu:Sfum_3702 periplasmic binding protein.
 
 
 0.977
Ddes_0797
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: dvu:DVU0648 iron compound ABC transporter, ATP-binding protein.
 
 
 0.944
Ddes_0989
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pho:PH1235 ferrichrome transport ATP-binding protein.
 
 
 0.938
Ddes_0798
PFAM: periplasmic binding protein; KEGG: dvl:Dvul_2313 periplasmic binding protein.
 
 
 0.931
Ddes_0991
PFAM: periplasmic binding protein; KEGG: pab:PAB0676 iron (III) ABC transporter, ATP-binding protein (hemv-3).
 
 
 0.835
Ddes_1512
TIGRFAM: TonB family protein; PFAM: Gram-negative tonB protein; KEGG: ppd:Ppro_1537 TonB family protein.
 
  
 0.822
Ddes_1511
PFAM: metallophosphoesterase; 5'-Nucleotidase domain protein; KEGG: cpr:CPR_1917 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase bifunctional periplasmic precursor protein; Belongs to the 5'-nucleotidase family.
       0.768
Ddes_1516
PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: sat:SYN_01048 iron(III) dicitrate transport protein.
 
  
 0.681
Ddes_2207
TIGRFAM: uroporphyrin-III C-methyltransferase; PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; Uroporphyrinogen III synthase HEM4; KEGG: dvl:Dvul_2236 uroporphyrin-III C-methyltransferase.
  
  
 0.503
Your Current Organism:
Desulfovibrio desulfuricans ATCC 27774
NCBI taxonomy Id: 525146
Other names: D. desulfuricans ATCC 27774, Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774
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