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YPO2843 YPO2843 YPO2841 YPO2841 YPO2842 YPO2842 potA potA potI potI potH potH YPO2031 YPO2031 YPO2030 YPO2030 potG potG sfuC sfuC YPO3048 YPO3048
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
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[Homology]
Score
YPO2843Putative transport system periplasmic protein; Similar to Agrobacterium radiobacter agropine permease protein AgtB TR:Q9R701 (EMBL:AF242881) (364 aa) fasta scores: E(): 9.9e-26, 30.3% id in 320 aa, and to Pseudomonas aeruginosa hypothetical protein PA0222 TR:AAG03611 (EMBL:AE004460) (352 aa) fasta scores: E(): 0,56.1% id in 342 aa. (342 aa)    
Predicted Functional Partners:
YPO2841
Putative ABC transporter permease; Similar to Agrobacterium tumefaciens mannopine permease MotD TR:Q44381 (EMBL:AF242881) (273 aa) fasta scores: E(): 0, 41.5% id in 258 aa, and to Pseudomonas aeruginosa probable ABC transporter permease PA0606 TR:AAG03995 (EMBL:AE004497) (276 aa) fasta scores: E(): 0,65.4% id in 260 aa.
 
 
 0.983
YPO2842
Putative ABC transporter permease; Similarity to the N-terminus of Agrobacterium tumefaciens mannopine permease MotC TR:Q44382 (EMBL:AF242881) (294 aa) fasta scores: E(): 2.7e-29, 41.3% id in 213 aa, and to the full length Pseudomonas aeruginosa probable ABC transporter permease PA0605 TR:AAG03994 (EMBL:AE004497) (415 aa) fasta scores: E(): 0, 54.7% id in 397 aa.
 
 
 0.983
potA
Putitive ABC-transporter ATP-binding protein; Part of the ABC transporter complex PotABCD involved in spermidine/putrescine import. Responsible for energy coupling to the transport system.
 
 
 0.943
potI
Similar to Escherichia coli putrescine transport system permease protein PotI SW:POTI_ECOLI (P31136) (281 aa) fasta scores: E(): 0, 84.3% id in 280 aa, and to Pseudomonas aeruginosa polyamine transport protein PotI TR:AAG03693 (EMBL:AE004468) (289 aa) fasta scores: E(): 0,63.4% id in 265 aa.
 
 
 0.882
potH
Similar to Escherichia coli putrescine transport system permease protein PotH SW:POTH_ECOLI (P31135) (317 aa) fasta scores: E(): 0, 80.6% id in 310 aa, and to Pseudomonas aeruginosa polyamine transport protein poth PotH TR:AAG03692 (EMBL:AE004468) (293 aa) fasta scores: E(): 0, 64.3% id in 291 aa.
 
 
 0.872
YPO2031
Similar to Escherichia coli spermidine/putrescine transport system permease protein PotB SW:POTB_ECOLI (P23860) (275 aa) fasta scores: E(): 1.2e-12, 21.4% id in 266 aa, and to Agrobacterium tumefaciens inner membrane protein MotC TR:Q44382 (EMBL:AF242881) (294 aa) fasta scores: E(): 3.7e-16, 28.7% id in 258 aa.
 
 
 0.848
YPO2030
Similar to Escherichia coli spermidine/putrescine transport system permease protein PotC SW:POTC_ECOLI (P23859) (264 aa) fasta scores: E(): 1.5e-11, 24.7% id in 219 aa, and to Bacillus licheniformis putative inner membrane protein Lam TR:Q45294 (EMBL:X94148) (270 aa) fasta scores: E(): 5.9e-19, 29.2% id in 267 aa.
  
 
 0.842
potG
Putrescine transport ATP-binding protein; Part of the ABC transporter complex PotABCD involved in spermidine/putrescine import. Responsible for energy coupling to the transport system.
 
 
 0.807
sfuC
iron(III)-transport ATP-binding protein; Part of the ABC transporter complex FbpABC involved in Fe(3+) ions import. Responsible for energy coupling to the transport system.
  
 
 0.752
YPO3048
Similar to Streptomyces coelicolor ABC-transporter ATP-binding protein Sc10a5.28C TR:O54119 (EMBL:AL021529) (361 aa) fasta scores: E(): 0, 42.9% id in 361 aa, and to Deinococcus radiodurans spermidine/putrescine ABC transporter, ATP-binding protein Dr1302 TR:Q9RUT0 (EMBL:AE001977) (362 aa) fasta scores: E(): 0, 42.2% id in 327 aa.
  
 
 0.752
Your Current Organism:
Yersinia pestis
NCBI taxonomy Id: 214092
Other names: Y. pestis CO92, Yersinia pestis CO92, Yersinia pestis str. CO92, Yersinia pestis strain CO92
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