STRINGSTRING
amgR amgR amgS amgS PA5528 PA5528 copS copS PA1243 PA1243 PA2524 PA2524 ercS-2 ercS-2 parS parS PA4886 PA4886 PA1438 PA1438 gacS gacS
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
amgRAmgR; Product name confidence: Class 1: Function experimentally demonstrated in P. aeruginosa. (247 aa)    
Predicted Functional Partners:
amgS
AmgS; Product name confidence: Class 1: Function experimentally demonstrated in P. aeruginosa.
 
 0.999
PA5528
Hypothetical protein; Product name confidence: Class 4 (Homologs of previously reported genes of unknown function, or no similarity to any previously reported sequences).
   
  
 0.935
copS
Two-component sensor, CopS; Member of a two-component regulatory system.
  
 
 0.879
PA1243
Probable sensor/response regulator hybrid; Product name confidence: Class 3 (Function proposed based on presence of conserved amino acid motif, structural feature or limited sequence similarity to an experimentally studied gene).
 
 
 0.852
PA2524
Probable two-component sensor; Member of a two-component regulatory system.
 
 
 0.805
ercS-2
ErcS; Product name confidence: Class 1: Function experimentally demonstrated in P. aeruginosa.
 
 0.801
parS
Two-component sensor, ParS; Product name confidence: Class 1: Function experimentally demonstrated in P. aeruginosa.
 
 
 0.792
PA4886
Probable two-component sensor; Member of a two-component regulatory system.
 
 
 0.784
PA1438
Probable two-component sensor; Member of a two-component regulatory system.
 
 0.782
gacS
Sensor/response regulator hybrid; Product name confidence: Class 2 (High similarity to functionally studied protein).
 
 
0.772
Your Current Organism:
Pseudomonas aeruginosa
NCBI taxonomy Id: 208964
Other names: P. aeruginosa PAO1, Pseudomonas aeruginosa PAO1, Pseudomonas sp. PAO1
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