STRINGSTRING
Gbro_1887 Gbro_1887 Gbro_1888 Gbro_1888 Gbro_1885 Gbro_1885 Gbro_1886 Gbro_1886 sbcD sbcD Gbro_1890 Gbro_1890 Gbro_1884 Gbro_1884 Gbro_0185 Gbro_0185 Gbro_1621 Gbro_1621 Gbro_1883 Gbro_1883
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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[Homology]
Score
Gbro_1887PFAM: transcriptional regulator PadR family protein; KEGG: bcj:BCAL0053 PadR family regulatory protein. (232 aa)    
Predicted Functional Partners:
Gbro_1888
TIGRFAM: drug resistance transporter, EmrB/QacA subfamily; PFAM: major facilitator superfamily MFS_1; KEGG: oan:Oant_3227 EmrB/QacA family drug resistance transporter.
       0.850
Gbro_1885
KEGG: scl:sce6151 hypothetical protein.
       0.664
Gbro_1886
KEGG: tgr:Tgr7_0702 putative glutathione S- transferase.
       0.664
sbcD
Nuclease SbcCD, D subunit; SbcCD cleaves DNA hairpin structures. These structures can inhibit DNA replication and are intermediates in certain DNA recombination reactions. The complex acts as a 3'->5' double strand exonuclease that can open hairpins. It also has a 5' single-strand endonuclease activity; Belongs to the SbcD family.
     
 0.629
Gbro_1890
KEGG: afw:Anae109_2144 DNA repair exonuclease, SbcC.
  
    0.619
Gbro_1884
PFAM: ABC transporter related; ABC transporter transmembrane region; SMART: AAA ATPase; KEGG: see:SNSL254_A2969 ATP binding cassette.
       0.606
Gbro_0185
Hypothetical protein.
  
     0.540
Gbro_1621
PFAM: transcriptional activator domain; transcriptional regulator domain protein; KEGG: rlg:Rleg_6834 transcriptional regulator, winged helix family.
  
    0.487
Gbro_1883
TIGRFAM: 2-oxoglutarate dehydrogenase, E1 subunit; PFAM: Transketolase central region; dehydrogenase E1 component; catalytic domain of components of various dehydrogenase complexes; KEGG: sfu:Sfum_3547 alpha-ketoglutarate decarboxylase.
  
    0.404
Your Current Organism:
Gordonia bronchialis
NCBI taxonomy Id: 526226
Other names: G. bronchialis DSM 43247, Gordonia bronchialis ATCC 25592, Gordonia bronchialis CCUG 20989, Gordonia bronchialis CCUG 34956, Gordonia bronchialis CIP 100847, Gordonia bronchialis DSM 43247, Gordonia bronchialis IFO 6047, Gordonia bronchialis JCM 3198, Gordonia bronchialis JCM 3231, Gordonia bronchialis LMG 5355, Gordonia bronchialis NBRC 16047, Gordonia bronchialis NCTC 10667, Gordonia bronchialis VKM Ac-956, Gordonia bronchialis str. DSM 43247, Gordonia bronchialis str. Tsukamura 3410, Gordonia bronchialis strain DSM 43247
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