STRINGSTRING
Cpin_6125 Cpin_6125 Cpin_0890 Cpin_0890 Cpin_3378 Cpin_3378 Cpin_5901 Cpin_5901 Cpin_6126 Cpin_6126 Cpin_6127 Cpin_6127
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cpin_6125PFAM: Uracil-DNA glycosylase superfamily; KEGG: bcj:BCAL0828 putative G/U mismatch-specific DNA glycosylase. (171 aa)    
Predicted Functional Partners:
Cpin_0890
KEGG: tgr:Tgr7_0109 exodeoxyribonuclease III Xth; TIGRFAM: exodeoxyribonuclease III Xth; exodeoxyribonuclease III; PFAM: Endonuclease/exonuclease/phosphatase.
  
 
 0.691
Cpin_3378
TIGRFAM: exodeoxyribonuclease III Xth; exodeoxyribonuclease III; PFAM: Endonuclease/exonuclease/phosphatase; KEGG: sme:SMc00956 exodeoxyribonuclease III protein.
  
 
 0.691
Cpin_5901
KEGG: aby:ABAYE1809 hypothetical protein.
  
 
 0.689
Cpin_6126
KEGG: rce:RC1_2264 2-oxoglutarate dehydrogenase, E1 component; TIGRFAM: 2-oxoglutarate dehydrogenase, E1 subunit; PFAM: Transketolase central region; dehydrogenase E1 component.
       0.528
Cpin_6127
Hypothetical protein; KEGG: bsu:BSU32150 transcriptional regulator.
       0.453
Your Current Organism:
Chitinophaga pinensis
NCBI taxonomy Id: 485918
Other names: C. pinensis DSM 2588, Chitinophaga pinensis ACM 2034, Chitinophaga pinensis DSM 2588, Chitinophaga pinensis str. DSM 2588, Chitinophaga pinensis strain DSM 2588
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