STRINGSTRING
Tgr7_0401 Tgr7_0401 Tgr7_0399 Tgr7_0399 Tgr7_0397 Tgr7_0397 Tgr7_0433 Tgr7_0433 Tgr7_1641 Tgr7_1641 Tgr7_0434 Tgr7_0434 Tgr7_1640 Tgr7_1640 Tgr7_1642 Tgr7_1642 Tgr7_1635 Tgr7_1635 Tgr7_0400 Tgr7_0400 Tgr7_0425 Tgr7_0425
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tgr7_0401KEGG: bcj:BCAL1579 hypothetical protein. (389 aa)    
Predicted Functional Partners:
Tgr7_0399
KEGG: bpt:Bpet4413 hypothetical protein.
 
     0.929
Tgr7_0397
KEGG: pol:Bpro_3744 protein of unknown function DUF1320.
 
     0.886
Tgr7_0433
PFAM: protein of unknown function DUF935; KEGG: pha:PSHAa1509 hypothetical protein.
 
    0.794
Tgr7_1641
KEGG: bvi:Bcep1808_1306 hypothetical protein.
 
    0.789
Tgr7_0434
TIGRFAM: phage head morphogenesis protein, SPP1 gp7 family; PFAM: putative head morphogenesis protein SPP1 gp7; KEGG: ecy:ECSE_2587 hypothetical protein.
 
    0.787
Tgr7_1640
KEGG: bpt:Bpet4409 F protein (gpF) (protein GP30).
 
    0.786
Tgr7_1642
KEGG: plu:plu3442 hypothetical protein.
 
     0.783
Tgr7_1635
KEGG: son:SO_0677 hypothetical protein.
 
     0.781
Tgr7_0400
KEGG: bbr:BB3627 phage-related putative exported protein.
       0.780
Tgr7_0425
PFAM: protein of unknown function DUF1018; KEGG: eca:ECA3696 putative phage regluatory protein.
 
    0.775
Your Current Organism:
Thioalkalivibrio sulfidiphilus
NCBI taxonomy Id: 396588
Other names: T. sulfidiphilus HL-EbGr7, Thioalkalivibrio sp. HL-EbGR7, Thioalkalivibrio sulfidiphilus HL-EbGr7, Thioalkalivibrio sulfidiphilus str. HL-EbGr7, Thioalkalivibrio sulfidiphilus strain HL-EbGr7, Thioalkalivibrio sulfidophilus HL-EbGr7
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