STRINGSTRING
Cwoe_3655 Cwoe_3655 Cwoe_3654 Cwoe_3654 Cwoe_0762 Cwoe_0762 Cwoe_1521 Cwoe_1521 Cwoe_1169 Cwoe_1169 Cwoe_4272 Cwoe_4272 Cwoe_5050 Cwoe_5050 Cwoe_2881 Cwoe_2881 Cwoe_1762 Cwoe_1762 Cwoe_0148 Cwoe_0148 Cwoe_1551 Cwoe_1551
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cwoe_3655RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: Sigma-70 region 4 type 2; sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; KEGG: bcj:BCAL1947 RNA polymerase sigma factor; Belongs to the sigma-70 factor family. ECF subfamily. (155 aa)    
Predicted Functional Partners:
Cwoe_3654
Transcriptional regulator, ArsR family; PFAM: regulatory protein ArsR; SMART: regulatory protein ArsR; KEGG: rlt:Rleg2_2358 transcriptional regulator, ArsR family.
  
    0.774
Cwoe_0762
RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: Sigma-70 region 4 type 2; sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; KEGG: ade:Adeh_1678 sigma-24 (FecI-like); Belongs to the sigma-70 factor family. ECF subfamily.
  
   
 0.678
Cwoe_1521
RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; sigma-70 region 4 domain protein; KEGG: cti:RALTA_A2405 RNA polymerase sigma factor, sigma-24; Belongs to the sigma-70 factor family. ECF subfamily.
  
   
 0.677
Cwoe_1169
RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; sigma-70 region 4 domain protein; KEGG: noc:Noc_1474 ECF sigma factor.
  
   
 0.662
Cwoe_4272
RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; KEGG: Hypothetical protein CBG04553.
  
     0.633
Cwoe_5050
RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; sigma-70 region 4 domain protein; KEGG: mlo:mll8140 RNA polymerase sigma factor; Belongs to the sigma-70 factor family. ECF subfamily.
  
     0.624
Cwoe_2881
RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; sigma-70 region 4 domain protein; KEGG: acp:A2cp1_2390 transcriptional regulator, Fis family; Belongs to the sigma-70 factor family. ECF subfamily.
  
     0.607
Cwoe_1762
RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; KEGG: ank:AnaeK_3915 RNA polymerase, sigma-24 subunit, ECF subfamily.
  
     0.588
Cwoe_0148
RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: Sigma-70 region 4 type 2; sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; KEGG: eba:ebA4517 RNA polymerase sigma factor (sigma24); Belongs to the sigma-70 factor family. ECF subfamily.
  
     0.578
Cwoe_1551
RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; KEGG: vap:Vapar_6315 RNA polymerase, sigma-24 subunit, ECF subfamily.
  
     0.568
Your Current Organism:
Conexibacter woesei DSM 14684
NCBI taxonomy Id: 469383
Other names: C. woesei DSM 14684, Conexibacter woesei str. DSM 14684, Conexibacter woesei strain DSM 14684
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