STRINGSTRING
Nhal_3080 Nhal_3080 Nhal_1407 Nhal_1407 Nhal_3169 Nhal_3169 Nhal_1148 Nhal_1148 Nhal_0521 Nhal_0521 Nhal_1225 Nhal_1225 Nhal_2684 Nhal_2684 Nhal_3078 Nhal_3078 Nhal_3079 Nhal_3079 Nhal_1891 Nhal_1891 Nhal_2128 Nhal_2128
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
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textmining
co-expression
protein homology
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Score
Nhal_3080Diguanylate cyclase; KEGG: bcj:BCAL1975 putative diguanylate cyclase; TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; SMART: GGDEF domain containing protein. (241 aa)    
Predicted Functional Partners:
Nhal_1407
Diguanylate cyclase; KEGG: noc:Noc_1271 hybrid signal transduction histidine kinase and diguanylate cyclase/phosphodiesterase; TIGRFAM: diguanylate cyclase; PFAM: EAL domain protein; Hpt domain protein; GGDEF domain containing protein; response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; SMART: EAL domain protein; GGDEF domain containing protein; Hpt domain protein; histidine kinase A domain protein; response regulator receiver; histidine kinase HAMP region domain protein; ATP-binding regi [...]
 
 
0.924
Nhal_3169
Diguanylate cyclase; KEGG: noc:Noc_1609 multisensor diguanylate cyclase/phophodiesterase; TIGRFAM: diguanylate cyclase; PAS sensor protein; PFAM: EAL domain protein; PAS fold-3 domain protein; GGDEF domain containing protein; GAF domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: EAL domain protein; GGDEF domain containing protein; PAC repeat-containing protein; GAF domain protein; PAS domain containing protein.
 
 
 0.888
Nhal_1148
Diguanylate cyclase; KEGG: dar:Daro_0972 response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s); TIGRFAM: diguanylate cyclase; PAS sensor protein; PFAM: EAL domain protein; PAS fold-3 domain protein; GGDEF domain containing protein; response regulator receiver; PAS fold domain protein; SMART: EAL domain protein; GGDEF domain containing protein; PAC repeat-containing protein; response regulator receiver; PAS domain containing protein.
 
 
 0.886
Nhal_0521
Diguanylate cyclase; KEGG: noc:Noc_2682 PAS sensor diguanylate cyclase/phophodiesterase; TIGRFAM: diguanylate cyclase; PAS sensor protein; PFAM: EAL domain protein; GGDEF domain containing protein; GAF domain protein; PAS fold domain protein; PAS fold-4 domain protein; SMART: EAL domain protein; GGDEF domain containing protein; GAF domain protein; PAS domain containing protein.
 
 
 0.864
Nhal_1225
Diguanylate cyclase; KEGG: noc:Noc_1758 PAS sensor diguanylate cyclase/phophodiesterase; TIGRFAM: diguanylate cyclase; PAS sensor protein; PFAM: EAL domain protein; GGDEF domain containing protein; response regulator receiver; PAS fold domain protein; PAS fold-4 domain protein; SMART: EAL domain protein; GGDEF domain containing protein; response regulator receiver; PAS domain containing protein.
 
 
0.851
Nhal_2684
KEGG: noc:Noc_0862 diguanylate cyclase/phosphodiesterase; TIGRFAM: diguanylate cyclase; PFAM: EAL domain protein; GGDEF domain containing protein; SMART: EAL domain protein; GGDEF domain containing protein.
 
 
 0.813
Nhal_3078
PFAM: Cupin 2 conserved barrel domain protein; KEGG: sat:SYN_01067 phosphoribosylaminoimidazole carboxylase ATPase subunit.
       0.636
Nhal_3079
KEGG: noc:Noc_1926 hypothetical protein.
       0.636
Nhal_1891
PAS sensor protein; Involved in chemotaxis. Part of a chemotaxis signal transduction system that modulates chemotaxis in response to various stimuli. Catalyzes the demethylation of specific methylglutamate residues introduced into the chemoreceptors (methyl-accepting chemotaxis proteins or MCP) by CheR. Also mediates the irreversible deamidation of specific glutamine residues to glutamic acid. Belongs to the CheB family.
  
 
 0.617
Nhal_2128
KEGG: gme:Gmet_3085 diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s); TIGRFAM: diguanylate cyclase; PAS sensor protein; PFAM: EAL domain protein; PAS fold-3 domain protein; GGDEF domain containing protein; PAS fold domain protein; PAS fold-4 domain protein; SMART: EAL domain protein; GGDEF domain containing protein; PAC repeat-containing protein; PAS domain containing protein.
 
 
0.593
Your Current Organism:
Nitrosococcus halophilus
NCBI taxonomy Id: 472759
Other names: N. halophilus Nc 4, Nitrosococcus halophilus Nc 4, Nitrosococcus halophilus str. Nc 4, Nitrosococcus halophilus strain Nc 4
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