STRINGSTRING
Snov_0995 Snov_0995 Snov_0996 Snov_0996 Snov_0997 Snov_0997 Snov_0998 Snov_0998 Snov_3567 Snov_3567 Snov_0759 Snov_0759 Snov_2167 Snov_2167 Snov_0993 Snov_0993
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Snov_0995KEGG: bcj:BCAL2067 hypothetical protein. (211 aa)    
Predicted Functional Partners:
Snov_0996
KEGG: bur:Bcep18194_A5304 hypothetical protein.
 
     0.951
Snov_0997
PFAM: protein of unknown function DUF899 thioredoxin family protein; KEGG: pol:Bpro_0083 protein of unknown function DUF899, thioredoxin-like.
 
     0.889
Snov_0998
KEGG: rhi:NGR_c03660 hypothetical protein.
       0.553
Snov_3567
PFAM: protein of unknown function DUF886; KEGG: pde:Pden_0325 hypothetical protein.
  
     0.488
Snov_0759
KEGG: atc:AGR_C_4413 hypothetical protein.
  
     0.479
Snov_2167
PFAM: YCII-related; KEGG: bra:BRADO1155 hypothetical protein.
  
     0.403
Snov_0993
Putative transmembrane anti-sigma factor; KEGG: bja:bll6483 hypothetical protein.
  
     0.402
Your Current Organism:
Starkeya novella
NCBI taxonomy Id: 639283
Other names: S. novella DSM 506, Starkeya novella DSM 506, Starkeya novella IAM 12100, Starkeya novella str. DSM 506, Starkeya novella strain DSM 506
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