STRINGSTRING
Ccel_0656 Ccel_0656 Ccel_0655 Ccel_0655 Ccel_0657 Ccel_0657 Ccel_0654 Ccel_0654 Ccel_2355 Ccel_2355 smc smc Ccel_0821 Ccel_0821
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ccel_0656KEGG: bcj:BCAL2501 hypothetical protein. (598 aa)    
Predicted Functional Partners:
Ccel_0655
Hypothetical protein.
  
    0.776
Ccel_0657
Hypothetical protein.
       0.746
Ccel_0654
PFAM: GerA spore germination protein; KEGG: cac:CA_P0020 spore germination protein, GrkA.
       0.439
Ccel_2355
PFAM: protein of unknown function DUF214; KEGG: lmf:LMOf2365_1233 ABC transporter, permease protein.
  
 
 0.416
smc
Chromosome segregation protein SMC; Required for chromosome condensation and partitioning. Belongs to the SMC family.
  
 
 0.405
Ccel_0821
KEGG: mfl:Mfl667 ribose ABC transporter permease component.
  
 
 0.405
Your Current Organism:
Ruminiclostridium cellulolyticum
NCBI taxonomy Id: 394503
Other names: Clostridium cellulolyticum H10, R. cellulolyticum H10, Ruminiclostridium cellulolyticum H10
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