STRINGSTRING
Galf_0925 Galf_0925 Galf_0926 Galf_0926 Galf_0927 Galf_0927 Galf_0928 Galf_0928 Galf_0929 Galf_0929 Galf_0930 Galf_0930 Galf_0924 Galf_0924
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Galf_0925PFAM: transposase IS3/IS911 family protein; KEGG: bcj:BCAL3252 putative transposase. (78 aa)    
Predicted Functional Partners:
Galf_0926
Hypothetical protein; Manually curated; KEGG: app:CAP2UW1_4683 hypothetical protein.
     
 0.779
Galf_0927
PFAM: outer membrane efflux protein; KEGG: tbd:Tbd_1329 cobalt-zinc-cadmium outer membrane resistance protein.
       0.529
Galf_0928
KEGG: tbd:Tbd_1328 secretion protein HlyD; TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
       0.522
Galf_0929
PFAM: nitrogen regulatory protein P-II; KEGG: har:HEAR1599 regulatory protein PII.
       0.516
Galf_0930
KEGG: tbd:Tbd_1327 heavy metal efflux pump CzcA; TIGRFAM: heavy metal efflux pump, CzcA family; PFAM: acriflavin resistance protein; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
       0.494
Galf_0924
PFAM: protein of unknown function DUF6 transmembrane; KEGG: asu:Asuc_1606 hypothetical protein.
       0.461
Your Current Organism:
Gallionella capsiferriformans
NCBI taxonomy Id: 395494
Other names: G. capsiferriformans ES-2, Gallionella capsiferriformans ES-2, Gallionella capsiferriformans str. ES-2, Gallionella capsiferriformans strain ES-2, Gallionella ferruginea ES-2, Gallionella ferruginea subsp. capsiferriformans ES-2
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