STRINGSTRING
Xcel_3197 Xcel_3197 Xcel_3196 Xcel_3196 Xcel_0148 Xcel_0148 Xcel_1590 Xcel_1590 Xcel_3198 Xcel_3198 Xcel_0381 Xcel_0381 Xcel_0137 Xcel_0137 Xcel_0960 Xcel_0960 Xcel_2776 Xcel_2776 Xcel_0147 Xcel_0147 Xcel_3123 Xcel_3123
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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[Homology]
Score
Xcel_3197Transcriptional regulator, LuxR family; PFAM: regulatory protein LuxR; Sigma-70 region 4 type 2; SMART: regulatory protein LuxR; KEGG: bcj:BCAM1981 LuxR superfamily regulatory protein. (876 aa)    
Predicted Functional Partners:
Xcel_3196
Transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein AraC type; SMART: helix-turn-helix- domain containing protein AraC type; KEGG: gox:GOX1022 transcriptional regulator.
 
     0.807
Xcel_0148
TIGRFAM: conserved repeat domain protein; KEGG: bcr:BCAH187_A3696 conserved repeat domain protein.
  
     0.754
Xcel_1590
PFAM: protein of unknown function DUF214; KEGG: gur:Gura_3474 ABC transporter related.
  
     0.751
Xcel_3198
Transcriptional regulator, AraC family; SMART: helix-turn-helix- domain containing protein AraC type; KEGG: bac:BamMC406_3145 AraC family transcriptional regulator.
  
     0.740
Xcel_0381
Hypothetical protein; KEGG: mpt:Mpe_A2047 ABC transporter, permease protein.
  
     0.725
Xcel_0137
Putative signal transduction histidine kinase; PFAM: ATP-binding region ATPase domain protein; KEGG: mpo:Mpop_3746 multi-sensor signal transduction histidine kinase.
  
     0.715
Xcel_0960
Hypothetical protein.
  
     0.710
Xcel_2776
PFAM: Patatin; KEGG: bpm:BURPS1710b_1675 patatin family phospholipase.
 
     0.707
Xcel_0147
KEGG: bat:BAS3452 hypothetical protein; TIGRFAM: LPXTG-motif cell wall anchor domain protein; conserved repeat domain protein; PFAM: von Willebrand factor type A; SMART: von Willebrand factor type A.
  
     0.696
Xcel_3123
KEGG: bbt:BBta_3059 hypothetical protein.
  
     0.685
Your Current Organism:
Xylanimonas cellulosilytica
NCBI taxonomy Id: 446471
Other names: X. cellulosilytica DSM 15894, Xylanimonas cellulosilytica DSM 15894, Xylanimonas cellulosilytica str. DSM 15894, Xylanimonas cellulosilytica strain DSM 15894
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