STRINGSTRING
ACS18159.1 ACS18159.1 ACS18160.1 ACS18160.1 ACS18158.1 ACS18158.1 ACS22347.1 ACS22347.1 ACS19802.1 ACS19802.1 ACS18161.1 ACS18161.1 ACS20361.1 ACS20361.1 ACS20686.1 ACS20686.1 ACS18163.1 ACS18163.1 rplF rplF ACS18162.1 ACS18162.1
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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[Homology]
Score
ACS18159.1PFAM: AMP-dependent synthetase and ligase; KEGG: bcj:BCAM2136 putative crotonobetaine/carnitine-CoA ligase. (535 aa)    
Predicted Functional Partners:
ACS18160.1
PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: swi:Swit_4190 short-chain dehydrogenase/reductase SDR.
 
   0.808
ACS18158.1
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: vei:Veis_2873 ABC transporter related.
       0.791
ACS22347.1
PFAM: manganese and iron superoxide dismutase; SMART: Rhodanese domain protein; KEGG: pol:Bpro_2502 manganese and iron superoxide dismutase.
  
 
 0.753
ACS19802.1
TIGRFAM: amino acid adenylation domain protein; PFAM: AMP-dependent synthetase and ligase; Beta-ketoacyl synthase; aminotransferase class-III; Acyl transferase; phosphopantetheine-binding; KEGG: bph:Bphy_1672 amino acid adenylation domain-containing protein.
  
0.716
ACS18161.1
PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: reh:H16_A2460 putative beta-hydroxyacyl-CoA dehydrogenase; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
  
   0.642
ACS20361.1
PFAM: KR domain protein; Beta-ketoacyl synthase; Acyl transferase; short-chain dehydrogenase/reductase SDR; phosphopantetheine-binding; KEGG: aav:Aave_3732 beta-ketoacyl synthase.
 
 0.642
ACS20686.1
PFAM: Respiratory-chain NADH dehydrogenase domain 51 kDa subunit; KEGG: pna:Pnap_0825 NADH dehydrogenase (quinone).
    
 
 0.633
ACS18163.1
KEGG: rso:RSc1827 putative 4-hydroxybenzoyl-CoA thioesterase protein.
 
  
 0.631
rplF
Ribosomal protein L6; This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center; Belongs to the universal ribosomal protein uL6 family.
    
 0.614
ACS18162.1
Transcriptional regulator, MarR family; PFAM: regulatory protein MarR; SMART: regulatory protein MarR; KEGG: rso:RS02009 putative transcription regulator protein.
       0.608
Your Current Organism:
Variovorax paradoxus S110
NCBI taxonomy Id: 543728
Other names: V. paradoxus S110, Variovorax paradoxus str. S110, Variovorax paradoxus strain S110
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