STRINGSTRING
Namu_1361 Namu_1361 Namu_2866 Namu_2866 Namu_2867 Namu_2867 Namu_1362 Namu_1362 Namu_5390 Namu_5390 Namu_0677 Namu_0677 Namu_4040 Namu_4040 Namu_4041 Namu_4041 Namu_1790 Namu_1790 Namu_5052 Namu_5052 Namu_0771 Namu_0771
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
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Cooccurrence
Coexpression
Experiments
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[Homology]
Score
Namu_1361PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; Male sterility domain; KEGG: bcj:BCAM2651 short chain dehydrogenase; Belongs to the short-chain dehydrogenases/reductases (SDR) family. (234 aa)    
Predicted Functional Partners:
Namu_2866
PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: smt:Smal_3751 glyoxalase/bleomycin resistance protein/dioxygenase.
  
     0.613
Namu_2867
Transcriptional regulator, MarR family; PFAM: regulatory protein MarR; SMART: regulatory protein MarR; KEGG: csa:Csal_0279 transcriptional regulator, MarR family.
  
     0.598
Namu_1362
PFAM: helix-turn-helix HxlR type; KEGG: rpi:Rpic_3847 transcriptional regulator, HxlR family.
       0.559
Namu_5390
Transcriptional regulator, TetR family; PFAM: regulatory protein TetR; KEGG: acp:A2cp1_1650 regulatory protein TetR.
  
     0.556
Namu_0677
PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: bxe:Bxe_A2879 putative alcohol dehydrogenase, zinc-independent.
  
 
 0.530
Namu_4040
SMART: helix-turn-helix domain protein; KEGG: mlo:mll1636 hypothetical protein.
  
     0.480
Namu_4041
PFAM: short-chain dehydrogenase/reductase SDR; KEGG: bja:blr1253 dehydrogenase.
  
   0.478
Namu_1790
PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: rlt:Rleg2_4304 glyoxalase/bleomycin resistance protein/dioxygenase.
  
     0.463
Namu_5052
PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: bmj:BMULJ_03346 putative short-chain alcohol dehydrogenase.
  
 
 0.460
Namu_0771
PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: cti:RALTA_A1991 putative short-chain dehydrogenases/reductases (SDR) family protein.
  
 
 0.445
Your Current Organism:
Nakamurella multipartita
NCBI taxonomy Id: 479431
Other names: N. multipartita DSM 44233, Nakamurella multipartita DSM 44233, Nakamurella multipartita str. DSM 44233, Nakamurella multipartita strain DSM 44233
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