STRINGSTRING
Namu_1039 Namu_1039 Namu_1038 Namu_1038 Namu_1037 Namu_1037 purD purD Namu_2299 Namu_2299 egtD egtD Namu_2946 Namu_2946 Namu_1309 Namu_1309 Namu_0969 Namu_0969
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Namu_1039PFAM: HpcH/HpaI aldolase; KEGG: bcj:BCAS0023 HpcH/HpaI aldolase/citrate lyase family protein; Belongs to the HpcH/HpaI aldolase family. (271 aa)    
Predicted Functional Partners:
Namu_1038
PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: bpd:BURPS668_A3030 CaiB/BaiF family protein; Belongs to the CoA-transferase III family.
 
  
 0.856
Namu_1037
TIGRFAM: citrate/H+ symporter, CitMHS family; PFAM: Citrate transporter; TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: sml:Smlt3951 citrate transporter.
 
   
 0.602
purD
KEGG: bcs:BCAN_A0419 phosphoribosylamine--glycine ligase; TIGRFAM: phosphoribosylamine/glycine ligase; PFAM: phosphoribosylglycinamide synthetase; protein of unknown function DUF201; Belongs to the GARS family.
     
 0.487
Namu_2299
KEGG: pna:Pnap_3246 hypothetical protein.
      
 0.475
egtD
Methyltransferase; Catalyzes the SAM-dependent triple methylation of the alpha- amino group of histidine to form hercynine, a step in the biosynthesis pathway of ergothioneine; Belongs to the methyltransferase superfamily. EgtD family.
      
 0.474
Namu_2946
9-cis-epoxycarotenoid dioxygenase; PFAM: Carotenoid oxygenase; KEGG: bcj:BCAL0188 putative dioxygenase.
      
 0.467
Namu_1309
TIGRFAM: succinate dehydrogenase or fumarate reductase, flavoprotein subunit; succinate dehydrogenase, flavoprotein subunit; PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; FAD dependent oxidoreductase; KEGG: sfu:Sfum_2104 succinate dehydrogenase, flavoprotein subunit.
 
    0.410
Namu_0969
PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: bxe:Bxe_C0282 alpha-methylacyl-CoA racemase; Belongs to the CoA-transferase III family.
 
  
 0.401
Your Current Organism:
Nakamurella multipartita
NCBI taxonomy Id: 479431
Other names: N. multipartita DSM 44233, Nakamurella multipartita DSM 44233, Nakamurella multipartita str. DSM 44233, Nakamurella multipartita strain DSM 44233
Server load: low (20%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.