STRINGSTRING
Aave_0444 Aave_0444 Aave_3626 Aave_3626 Aave_4296 Aave_4296 Aave_0018 Aave_0018 Aave_0171 Aave_0171 Aave_2271 Aave_2271 Aave_1955 Aave_1955 Aave_4761 Aave_4761 Aave_0455 Aave_0455 rpoA rpoA Aave_0978 Aave_0978
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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[Homology]
Score
Aave_0444Transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein, AraC type; KEGG: bma:BMAA1621 regulatory protein HrpB. (468 aa)    
Predicted Functional Partners:
Aave_3626
PFAM: Inosine/uridine-preferring nucleoside hydrolase; KEGG: rso:RSc0245 hypothetical/unknown protein.
  
   
 0.766
Aave_4296
PFAM: Carbohydrate binding family 6; KEGG: xac:XAC0817 hypothetical protein.
  
   
 0.662
Aave_0018
KEGG: rso:RS03064 hypothetical protein.
 
     0.601
Aave_0171
KEGG: xcv:XCV0233 putative secreted protein.
  
     0.575
Aave_2271
PFAM: porin, Gram-negative type; KEGG: rso:RSc2136 probable porin signal peptide protein.
  
     0.540
Aave_1955
PFAM: protein of unknown function DUF1486; KEGG: xcb:XC_0369 hypothetical protein.
 
     0.535
Aave_4761
KEGG: pol:Bpro_4860 hypothetical protein.
  
     0.520
Aave_0455
TIGRFAM: type III secretion protein SpaR/YscT/HrcT; PFAM: type III secretion system inner membrane R protein; KEGG: xom:XOO_0083 HrcT protein.
 
   
 0.507
rpoA
DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 
 0.503
Aave_0978
PFAM: protein of unknown function DUF1328; KEGG: pol:Bpro_0066 protein of unknown function DUF1328.
  
     0.492
Your Current Organism:
Acidovorax citrulli
NCBI taxonomy Id: 397945
Other names: A. citrulli AAC00-1, Acidovorax avenae subsp. citrulli AAC00-1, Acidovorax citrulli AAC00-1, Acidovorax citrulli str. AAC00-1, Acidovorax citrulli strain AAC00-1
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