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gspN gspN gspL gspL gspM gspM gspH gspH gspK gspK gspJ gspJ gspI gspI BPSL0790 BPSL0790 BPSL1204 BPSL1204 BPSL2644 BPSL2644 BPSL2321 BPSL2321
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
gspNPreviously sequenced as Burkholderia pseudomallei general secretory pathway protein N GspN SWALL:Q9ZF75 (EMBL:AF110185) (263 aa) fasta scores: E(): 1e-102, 100% id in 263 aa. Similar to Aeromonas hydrophila general secretion pathway protein N ExeN SWALL:GSPN_AERHY (SWALL:P41852) (252 aa) fasta scores: E(): 1.1, 24.8% id in 250 aa. (263 aa)    
Predicted Functional Partners:
gspL
Previously sequenced as Burkholderia pseudomallei general secretory pathway protein L GspL SWALL:Q9ZF77 (EMBL:AF110185) (444 aa) fasta scores: E(): 3.1e-79, 95.67% id in 462 aa. CDS is extended at the N-terminus in comparison to the previously sequenced protein. CDS also contains extra internal amino acid residues (229 to 246) relative to the previously sequenced protein. C-terminal region is similar to Pseudomonas aeruginosa general secretion pathway protein L XcpY SWALL:GSPL_PSEAE (SWALL:P25060) (382 aa) fasta scores: E(): 0.75, 24.33% id in 378 aa.
 
   
 0.941
gspM
Previously sequenced as Burkholderia pseudomallei general secretory pathway protein M GspM SWALL:Q9ZF76 (EMBL:AF110185) (168 aa) fasta scores: E(): 3.3e-58, 100% id in 168 aa. Similar to Erwinia carotovora general secretion pathway protein M OutM SWALL:GSPM_ERWCA (SWALL:P31709) (164 aa) fasta scores: E(): 0.00098, 26.58% id in 158 aa.
 
   
 0.935
gspH
Previously sequenced as Burkholderia pseudomallei general secretory pathway protein H GspH SWALL:Q9ZF81 (EMBL:AF110185) (159 aa) fasta scores: E(): 4.1e-60, 100% id in 159 aa. Similar to Erwinia carotovora general secretion pathway protein G precursor OutG SWALL:GSPG_ERWCA (SWALL:P31586) (156 aa) fasta scores: E(): 0.38, 29.73% id in 111 aa.
 
   
 0.930
gspK
Previously sequenced as Burkholderia pseudomallei general secretory pathway protein K GspK SWALL:Q9ZF78 (EMBL:AF110185) (356 aa) fasta scores: E(): 9.2e-126, 99.15% id in 356 aa. Similar to Erwinia carotovora general secretion pathway protein K OutK SWALL:GSPK_ERWCA (SWALL:P31706) (328 aa) fasta scores: E(): 0.59, 24.63% id in 345 aa.
 
   
 0.927
gspJ
General secretory pathway protein J; N-terminal region is identical to the previously sequenced Burkholderia pseudomallei general secretory pathway protein J GspJ SWALL:Q9ZF79 (EMBL:AF110185) (217 aa) fasta scores: E(): 3.3e-70, 100% id in 192 aa. CDS differs from the previously sequenced protein in the C-terminal region. C-terminal region is similar to Burkholderia cepacia general secretory pathway protein GspJ SWALL:Q9F1P4 (EMBL:AB050004) (222 aa) fasta scores: E(): 3e-60, 75.67% id in 222 aa.
 
   
 0.875
gspI
Previously sequenced as Burkholderia pseudomallei general secretory pathway protein I GspI SWALL:Q9ZF80 (EMBL:AF110185) (134 aa) fasta scores: E(): 1.1e-49, 100% id in 134 aa. Similar to Pseudomonas aeruginosa general secretion pathway protein I precursor XcpV or PddC SWALL:GSPI_PSEAE (SWALL:Q00516) (129 aa) fasta scores: E(): 0.00019, 37% id in 100 aa.
 
   
 0.864
BPSL0790
Similar to Ralstonia solanacearum hypothetical protein rsc0564 or rs04901 SWALL:Q8Y1X3 (EMBL:AL646060) (146 aa) fasta scores: E(): 2.4e-19, 43.75% id in 144 aa.
  
     0.752
BPSL1204
Putative lipoprotein; Similar to Ralstonia solanacearum probable lipoprotein transmembrane rsc1480 or rs03826 SWALL:Q8XZC1 (EMBL:AL646064) (177 aa) fasta scores: E(): 7.6e-32, 54.32% id in 162 aa, and to Ralstonia solanacearum probable transmembrane protein rsc2071 or rs03636 SWALL:Q8XXP2 (EMBL:AL646068) (173 aa) fasta scores: E(): 6.8e-26, 48.07% id in 156 aa.
  
     0.751
BPSL2644
Putative exported protein; Similar to Ralstonia solanacearum probable transmembrane protein rsc0700 or rs01605 SWALL:Q8Y1J0 (EMBL:AL646060) (204 aa) fasta scores: E(): 1.3e-26, 46.39% id in 194 aa.
  
     0.739
BPSL2321
Putative membrane protein; Similar to Ralstonia solanacearum probable transmembrane protein rsc1255 or rs02771 SWALL:Q8XZZ0 (EMBL:AL646063) (285 aa) fasta scores: E(): 2.8e-55, 53.58% id in 265 aa.
  
     0.723
Your Current Organism:
Burkholderia pseudomallei
NCBI taxonomy Id: 272560
Other names: B. pseudomallei K96243, Burkholderia pseudomallei K96243, Burkholderia pseudomallei str. K96243, Burkholderia pseudomallei strain K96243
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