STRINGSTRING
BPSL0072 BPSL0072 BPSL0071 BPSL0071 BPSL0069 BPSL0069 BPSL0070 BPSL0070 BPSL1330 BPSL1330 BPSL1332 BPSL1332 BPSL1329 BPSL1329 mdcB mdcB BPSL1333 BPSL1333 BPSL2875 BPSL2875
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
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Gene Fusion
Cooccurrence
Coexpression
Experiments
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[Homology]
Score
BPSL0072Putative type-b cytochrome; Similar to Escherichia coli cytochrome b561 CybB SWALL:C561_ECOLI (SWALL:P08732) (176 aa) fasta scores: E(): 1.5e-07, 31.66% id in 180 aa, and to Xanthomonas axonopodis pv. citri str. 306 cytochrome b561 YodB SWALL:AAM38827 (EMBL:AE012047) (180 aa) fasta scores: E(): 7.9e-37, 60% id in 170 aa. (175 aa)    
Predicted Functional Partners:
BPSL0071
Putative catalase; Has an organic peroxide-dependent peroxidase activity. Belongs to the catalase family.
 
     0.919
BPSL0069
Similar to Pseudomonas fluorescens transmembrane regulator PrtR SWALL:Q9KIN0 (EMBL:AF228766) (242 aa) fasta scores: E(): 2.2e-34, 47.45% id in 236 aa, and to Xanthomonas axonopodis pv. citri str. 306 transmembrane regulator protein PrtR SWALL:AAM38824 (EMBL:AE012047) (250 aa) fasta scores: E(): 2.5e-26, 40.63% id in 251 aa.
 
     0.698
BPSL0070
Similar to Pseudomonas fluorescens putative RNA polymerase sigma factor PrtI SWALL:Q9KIM9 (EMBL:AF228767) (165 aa) fasta scores: E(): 1.5e-36, 61.67% id in 167 aa, and to Xanthomonas axonopodis pv. citri str. 306 ecf sigma factor PrtI SWALL:AAM38825 (EMBL:AE012047) (171 aa) fasta scores: E(): 3.9e-32, 56.97% id in 172 aa; Belongs to the sigma-70 factor family. ECF subfamily.
       0.529
BPSL1330
Similar to Xanthomonas campestris delta subunit of malonate decarboxylase xcc3610 SWALL:AAM42880 (EMBL:AE012482) (105 aa) fasta scores: E(): 2e-16, 56.43% id in 101 aa, and to Burkholderia cepacia malonate decarboxylase delta-subunit MdcC SWALL:Q93L23 (EMBL:AF029344) (108 aa) fasta scores: E(): 2.4e-12, 52.8% id in 89 aa.
  
     0.512
BPSL1332
Similar to Xanthomonas axonopodis malonate decarboxylase gamma subunit xac0563 SWALL:AAM35452 (EMBL:AE011683) (234 aa) fasta scores: E(): 2.1e-27, 44.63% id in 233 aa, and to Burkholderia cepacia malonate decarboxylase gamma-subunit MdcE SWALL:Q93L25 (EMBL:AF029344) (233 aa) fasta scores: E(): 2.8e-24, 42.6% id in 230 aa.
  
     0.495
BPSL1329
Similar to Xanthomonas campestris alpha subunit of malonate decarboxylase xcc3609 SWALL:AAM42879 (EMBL:AE012482) (548 aa) fasta scores: E(): 2.1e-149, 69.78% id in 546 aa, and to Burkholderia cepacia malonate decarboxylase alpha-subunit MdcA SWALL:Q93L22 (EMBL:AF029344) (560 aa) fasta scores: E(): 3.2e-148, 69.55% id in 555 aa.
  
     0.454
mdcB
Putative coenzyme-A synthase; Involved in the formation of 2-(5''-phosphoribosyl)-3'- dephosphocoenzyme-A, the prosthetic group of the acyl-carrier protein of the malonate decarboxylase; Belongs to the CitG/MdcB family.
  
     0.425
BPSL1333
Similar to Xanthomonas axonopodis malonate decarboxylase xac0564 SWALL:AAM35453 (EMBL:AE011683) (213 aa) fasta scores: E(): 4.5e-11, 44.36% id in 142 aa, and to Burkholderia cepacia MdcG SWALL:Q93L26 (EMBL:AF029344) (230 aa) fasta scores: E(): 5.8e-08, 35.11% id in 168 aa.
  
     0.422
BPSL2875
Putative exported protein; Similar to Ralstonia solanacearum probable signal peptide protein rsc2718 or rs00003 SWALL:Q8XVV9 (EMBL:AL646071) (189 aa) fasta scores: E(): 1.9e-32, 53.51% id in 185 aa, and to Xanthomonas axonopodis hypothetical protein xac3034 SWALL:AAM37879 (EMBL:AE011945) (189 aa) fasta scores: E(): 7.4e-10, 32% id in 175 aa; Belongs to the UPF0312 family.
 
  
 0.418
Your Current Organism:
Burkholderia pseudomallei
NCBI taxonomy Id: 272560
Other names: B. pseudomallei K96243, Burkholderia pseudomallei K96243, Burkholderia pseudomallei str. K96243, Burkholderia pseudomallei strain K96243
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