STRINGSTRING
BPSL0106 BPSL0106 BPSS0068 BPSS0068 BPSL1811 BPSL1811 BPSS0459 BPSS0459 BPSS2192 BPSS2192 sctQ sctQ BPSS2193 BPSS2193 BPSL1888 BPSL1888 BPSS1768 BPSS1768 BPSS1579 BPSS1579 BPSL0107 BPSL0107
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BPSL0106Putative exported protein; No significant database matches. (189 aa)    
Predicted Functional Partners:
BPSS0068
Hypothetical protein; No significant database matches.
  
     0.732
BPSL1811
Putative membrane protein; Similar to Ralstonia solanacearum putative transmembrane protein rsc0649 or rs01553 SWALL:Q8Y1P1 (EMBL:AL646060) (144 aa) fasta scores: E(): 3.7e-14, 40.58% id in 138 aa.
  
     0.722
BPSS0459
Similar to Ralstonia solanacearum probable copper resistance D transmembrane protein CopD or rsp0659 or rs01790 SWALL:Q8XS22 (EMBL:AL646080) (309 aa) fasta scores: E(): 2.3e-08, 30.88% id in 327 aa, and to Pseudomonas syringae copper resistance protein D copD SWALL:COPD_PSESF (SWALL:Q9KWM8) (311 aa) fasta scores: E(): 2.6e-08, 31.29% id in 262 aa.
 
     0.657
BPSS2192
Putative membrane protein; No significant database matches.
  
     0.646
sctQ
Similar to the previously sequenced Burkholderia pseudomallei type III secretion-associated protein SctQ SWALL:Q9ZGR1 (EMBL:AF074878) (310 aa) fasta scores: E(): 4.2e-117, 98.06% id in 310 aa. Similar to Zea mays fdr3 SWALL:Q94KV5 (EMBL:AF262623) (355 aa) fasta scores: E(): 1.1e-16, 33.33% id in 315 aa, and to Ralstonia solanacearum protein HrpQ or HrcQ or rsp0861 or rs01632 SWALL:Q52489 (EMBL:AJ245811) (354 aa) fasta scores: E(): 1.8e-12, 29.09% id in 299 aa.
  
     0.623
BPSS2193
Putative membrane protein; No significant database matches.
  
     0.604
BPSL1888
Putative membrane protein; Similar to Ralstonia solanacearum probable transmembrane protein rsp1080 or rs02587 SWALL:Q8XQY8 (EMBL:AL646082) (541 aa) fasta scores: E(): 1e-35, 34.76% id in 584 aa, and to Agrobacterium tumefaciens hypothetical protein atu1609 or agr_c_2962 SWALL:Q8UEZ4 (EMBL:AE009118) (579 aa) fasta scores: E(): 3.8e-06, 25.71% id in 599 aa.
  
     0.561
BPSS1768
Putative membrane protein; Similar to Ralstonia solanacearum probable transmembrane protein rsp1080 or rs02587 SWALL:Q8XQY8 (EMBL:AL646082) (541 aa) fasta scores: E(): 1.6e-38, 33.68% id in 576 aa, and to Rhizobium loti hypothetical protein mll7595 SWALL:Q985N8 (EMBL:AP003012) (589 aa) fasta scores: E(): 1.4e-28, 28.31% id in 611 aa.
  
     0.544
BPSS1579
Hypothetical protein; No significant database matches to the full length protein.
  
     0.531
BPSL0107
LysR family transcription regulatory protein; Similar to Pseudomonas aeruginosa probable transcriptional regulator pa2447 SWALL:Q9I135 (EMBL:AE004672) (307 aa) fasta scores: E(): 3.8e-43, 44.14% id in 299 aa, and to Ralstonia solanacearum probable transcription regulator protein rsp0910 or rs01682 SWALL:Q8XRE4 (EMBL:AL646081) (309 aa) fasta scores: E(): 8.5e-36, 39.72% id in 287 aa; Belongs to the LysR transcriptional regulatory family.
       0.524
Your Current Organism:
Burkholderia pseudomallei
NCBI taxonomy Id: 272560
Other names: B. pseudomallei K96243, Burkholderia pseudomallei K96243, Burkholderia pseudomallei str. K96243, Burkholderia pseudomallei strain K96243
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