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BPSL0120 BPSL0120 BPSL0450 BPSL0450 BPSL2274 BPSL2274 BPSL0432 BPSL0432 ssb ssb gspO gspO BPSL1898 BPSL1898 BPSL0119 BPSL0119 recR recR RadC RadC fmt fmt
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
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Textmining
[Homology]
Score
BPSL0120SMF family protein; C-terminus is similar to the C-terminal region of Haemophilus influenzae DNA processing chain A protein Smf or DprA SWALL:SMF_HAEIN (SWALL:P43862) (373 aa) fasta scores: E(): 2.1e-30, 41.92% id in 322 aa. Full length CDS is similar to the C-terminal region of Ralstonia solanacearum probable Smf protein rsc0068 or rs02247 SWALL:Q8Y3B2 (EMBL:AL646057) (401 aa) fasta scores: E(): 8.4e-58, 53.33% id in 360 aa. Possible alternative translational start site after codon 21. (396 aa)    
Predicted Functional Partners:
BPSL0450
Conserved hypothetical protein; Similar to Haemophilus influenzae competence protein F Comf SWALL:COMF_HAEIN (SWALL:P31773) (229 aa) fasta scores: E(): 5e-10, 30.31% id in 221 aa, and to Ralstonia solanacearum putative competence protein F-related protein rsc0359 or rs03327 SWALL:Q8Y2H7 (EMBL:AL646058) (240 aa) fasta scores: E(): 4.8e-28, 47.52% id in 242 aa.
 
 
 0.914
BPSL2274
Putative membrane protein; C-terminal region is similar to Neisseria gonorrhoeae competence protein ComA SWALL:COMA_NEIGO (SWALL:P51973) (691 aa) fasta scores: E(): 3.6e-18, 35.73% id in 778 aa> Full length CDS is similar to Xanthomonas campestris DNA uptake/competence protein xcc2123 SWALL:AAM41408 (EMBL:AE012319) (796 aa) fasta scores: E(): 7.5e-29, 38.66% id in 869 aa.
 
  
 0.907
BPSL0432
Putative magnesium chelatase subunit; Similar to Haemophilus influenzae competence protein ComM SWALL:COMM_HAEIN (SWALL:P45049) (509 aa) fasta scores: E(): 2.5e-43, 47.03% id in 523 aa, and to Ralstonia solanacearum probable mg(2+) chelatase family protein rsc0338 or rs03305 SWALL:Q8Y2J7 (EMBL:AL646058) (510 aa) fasta scores: E(): 3.2e-67, 63.55% id in 524 aa.
 
 0.840
ssb
Single-strand binding protein; Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism.
 
  
 0.727
gspO
Type IV prepilin leader peptide type M1; Cleaves type-4 fimbrial leader sequence and methylates the N- terminal (generally Phe) residue.
 
  
 0.718
BPSL1898
Family A24A unassigned peptidase; Similar to the plasmid borne Ralstonia solanacearum probable prepilin peptidase transmembrane protein CpaA2 or rsp1091 or rs02612 SWALL:Q8XQX7 (EMBL:AL646082) (168 aa) fasta scores: E(): 8.9e-11, 38.88% id in 162 aa, and to the C-terminal region of Escherichia coli type 4 prepilin-like proteins leader peptide processing enzyme [includes: leader peptidase (EC 3.4.99.-) (prepilin peptidase); n-methyltransferase (EC 2.1.1.-)] HofD or HopD or HopO or b3335 SWALL:LEP4_ECOLI (SWALL:P25960) (225 aa) fasta scores: E(): 0.0086, 25.67% id in 148 aa.
  
  
 0.673
BPSL0119
Putative thioredoxin; Similar to Emericella nidulans thioredoxin SWALL:THIO_EMENI (SWALL:P29429) (109 aa) fasta scores: E(): 0.0055, 31.25% id in 80 aa, and to Ralstonia solanacearum putative thioredoxin-like protein rsc0067 or rs02246 SWALL:Q8Y3B3 (EMBL:AL646057) (129 aa) fasta scores: E(): 2.2e-24, 57.72% id in 123 aa.
  
  
 0.664
recR
Recombination protein; May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO.
 
   
 0.634
RadC
Similar to Escherichia coli DNA repair protein RadC or b3638 SWALL:RADC_ECOLI (SWALL:P25531) (222 aa) fasta scores: E(): 3e-30, 42.32% id in 215 aa, and to Ralstonia solanacearum DNA repair protein RadC homolog rsc2444 or rs01350 SWALL:Q8XWN0 (EMBL:AL646070) (224 aa) fasta scores: E(): 1.3e-38, 53.08% id in 211 aa, and to Pseudomonas aeruginosa DNA repair protein RadC homolog pa5319 SWALL:RADC_PSEAE (SWALL:Q9HTN5) (224 aa) fasta scores: E(): 2.1e-37, 50.7% id in 213 aa; Belongs to the UPF0758 family.
  
  
 0.628
fmt
methionyl-tRNA formyltransferase; Attaches a formyl group to the free amino group of methionyl- tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus; Belongs to the Fmt family.
 
     0.625
Your Current Organism:
Burkholderia pseudomallei
NCBI taxonomy Id: 272560
Other names: B. pseudomallei K96243, Burkholderia pseudomallei K96243, Burkholderia pseudomallei str. K96243, Burkholderia pseudomallei strain K96243
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