STRINGSTRING
BPSL0348 BPSL0348 BPSL1958 BPSL1958 BPSL0349 BPSL0349 BPSS0802 BPSS0802 BPSS1107 BPSS1107
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BPSL0348Hypothetical protein; Poor database matches. C-terminal region is weakly similar to Ralstonia solanacearum hypothetical protein rsc0613 or rs01514 SWALL:Q8Y1S6 (EMBL:AL646060) (190 aa) fasta scores: E(): 0.024, 25% id in 188 aa. (257 aa)    
Predicted Functional Partners:
BPSL1958
Hypothetical protein; No significant database matches. Note: Contains the following variable repeat throughout the full length of the CDS: 6x[AASNQFGIPNQTDVFAVXXS/NGA/SLXVA/SWVVSAXXWNGPXXIXXAGXFPA/ SXAXV].
      
 0.579
BPSL0349
Conserved hypothetical protein; Poor database matches. Similar to Ralstonia solanacearum hypothetical protein rsc0613 or rs01514 SWALL:Q8Y1S6 (EMBL:AL646060) (190 aa) fasta scores: E(): 1.3e-15, 34.97% id in 183 aa.
      
0.526
BPSS0802
Putative extracellular ligand binding protein; Similar to Pseudomonas aeruginosa leucine-, isoleucine-, valine-, threonine-, and alanine-binding protein precursor BraC SWALL:BRAC_PSEAE (SWALL:P21175) (373 aa) fasta scores: E(): 8.7e-34, 33.6% id in 369 aa, and to Ralstonia solanacearum putative amino-acid transport signal peptide protein rsc3300 or rs02529 SWALL:Q8XU93 (EMBL:AL646074) (377 aa) fasta scores: E(): 1.6e-60, 49.31% id in 367 aa. Similar to BPSL3284, 88.421% identity (88.421% ungapped) in 380 aa overlap.
      
 0.499
BPSS1107
Hypothetical protein; No significant database matches.
      
 0.499
Your Current Organism:
Burkholderia pseudomallei
NCBI taxonomy Id: 272560
Other names: B. pseudomallei K96243, Burkholderia pseudomallei K96243, Burkholderia pseudomallei str. K96243, Burkholderia pseudomallei strain K96243
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