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rpsT rpsT rpmB rpmB rpsO rpsO rpmF rpmF rplM rplM rplU rplU rpmE2 rpmE2 rpsP rpsP rpmA rpmA rplY rplY rpsI rpsI
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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[Homology]
Score
rpsTPutative 30S ribosomal protein S20; Binds directly to 16S ribosomal RNA. (92 aa)    
Predicted Functional Partners:
rpmB
50S ribosomal protein L28; Similar to Escherichia coli, and Escherichia coli O157:H7 50S ribosomal protein L28 RpmB or b3637 or z5061 or ecs4512 SWALL:RL28_ECOLI (SWALL:P02428) (77 aa) fasta scores: E(): 1.1e-20, 73.33% id in 75 aa, and to Ralstonia solanacearum 50S ribosomal protein L28 RpmB or rsc2445 or rs01349 SWALL:RL28_RALSO (SWALL:Q8XWM9) (77 aa) fasta scores: E(): 1.1e-28, 94.73% id in 76 aa, and to Neisseria meningitidis 50S ribosomal protein L28 RpmB or nma2166 or nmb0321 SWALL:RL28_NEIMA (SWALL:Q9JQQ3) (77 aa) fasta scores: E(): 1.7e-27, 90.9% id in 77 aa; Belongs to the bac [...]
  
 
 0.994
rpsO
30S ribosomal protein S15; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it helps nucleate assembly of the platform of the 30S subunit by binding and bridging several RNA helices of the 16S rRNA.
  
 
 0.993
rpmF
50S ribosomal protein L32; Similar to Escherichia coli, Escherichia coli O157:H7, Salmonella typhimurium, and Salmonella typhi 50S ribosomal protein L32 RpmF SWALL:RL32_ECOLI (SWALL:P02435) (56 aa) fasta scores: E(): 2.7e-11, 62.96% id in 54 aa, and to Ralstonia solanacearum 50S ribosomal protein L32 rsc1048 or rs04194 SWALL:RL32_RALSO (SWALL:Q8Y0J6) (58 aa) fasta scores: E(): 9.8e-22, 87.93% id in 58 aa; Belongs to the bacterial ribosomal protein bL32 family.
   
 
 0.993
rplM
50S ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.
  
 
 0.993
rplU
50S ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.
  
 
 0.993
rpmE2
50S ribosomal protein L31; Similar to Escherichia coli, and Escherichia coli O157:H7 50S ribosomal protein L31 type B-1 RpmE2 or b0296 or z0364 or ecs0327 SWALL:R31B_ECOLI (SWALL:P71302) (87 aa) fasta scores: E(): 3.7e-11, 47.61% id in 84 aa, and to Ralstonia solanacearum 50S ribosomal protein L31 type B rsc1182 or rs05714 SWALL:Q8Y062 (EMBL:AL646063) (87 aa) fasta scores: E(): 1.3e-23, 75% id in 88 aa.
  
 
 0.992
rpsP
30S ribosomal protein S16; Similar to Escherichia coli, and Escherichia coli O157:H7 30S ribosomal protein S16 RpsP SWALL:RS16_ECOLI (SWALL:P02372) (82 aa) fasta scores: E(): 1.1e-15, 58.02% id in 81 aa, and to Ralstonia solanacearum 30S ribosomal protein S16 rsc0933 or rs04481 SWALL:RS16_RALSO (SWALL:Q8Y0W0) (84 aa) fasta scores: E(): 5.4e-26, 83.33% id in 84 aa; Belongs to the bacterial ribosomal protein bS16 family.
  
 
 0.992
rpmA
Similar to Escherichia coli 50S ribosomal protein L27 RpmA or b3185 or z4547 or ecs4064 SWALL:RL27_ECOLI (SWALL:P02427) (84 aa) fasta scores: E(): 7.7e-19, 65.43% id in 81 aa; Belongs to the bacterial ribosomal protein bL27 family.
  
 
 0.992
rplY
Ribosomal L25p family protein; This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance. Belongs to the bacterial ribosomal protein bL25 family. CTC subfamily.
 
 
 0.991
rpsI
30S ribosomal protein S9; Similar to Escherichia coli, Escherichia coli O6, and Escherichia coli O157:H7 30S ribosomal protein S9 RpsI or b3230 or c3984 or z4588 or ecs4103 SWALL:RS9_ECOLI (SWALL:P02363) (129 aa) fasta scores: E(): 3.1e-29, 64.56% id in 127 aa, and to Ralstonia solanacearum 30S ribosomal protein S9 rsc0491 or rs05034 SWALL:RS9_RALSO (SWALL:Q8Y245) (130 aa) fasta scores: E(): 1.7e-44, 90.76% id in 130 aa; Belongs to the universal ribosomal protein uS9 family.
  
 
 0.991
Your Current Organism:
Burkholderia pseudomallei
NCBI taxonomy Id: 272560
Other names: B. pseudomallei K96243, Burkholderia pseudomallei K96243, Burkholderia pseudomallei str. K96243, Burkholderia pseudomallei strain K96243
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