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BPSL1100 BPSL1100 BPSL1099 BPSL1099 petC petC BPSL0697 BPSL0697 BPSL1256 BPSL1256 BPSL0461 BPSL0461 BPSL3354 BPSL3354 BPSL0460 BPSL0460 BPSL1261 BPSL1261 BPSL2364 BPSL2364 BPSL1600 BPSL1600
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
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Textmining
[Homology]
Score
BPSL1100Similar to Ralstonia solanacearum putative periplasmic cytochrome type-C oxidoreductase signal peptide protein rsc1000 or rs04292 SWALL:Q8Y0P3 (EMBL:AL646062) (133 aa) fasta scores: E(): 2.3e-12, 49.58% id in 121 aa, and to Marinobacter hydrocarbonoclasticus cytochrome C-552 SWALL:C552_MARHY (SWALL:P82903) (88 aa) fasta scores: E(): 3.7e-05, 38.63% id in 88 aa. (122 aa)    
Predicted Functional Partners:
BPSL1099
Similar to Ralstonia solanacearum putative periplasmic cytochrome type-C oxidoreductase signal peptide protein rsc0999 or rs04293 SWALL:Q8Y0P4 (EMBL:AL646062) (115 aa) fasta scores: E(): 1.5e-21, 58.77% id in 114 aa, and to Marinobacter hydrocarbonoclasticus cytochrome C-552 SWALL:C552_MARHY (SWALL:P82903) (88 aa) fasta scores: E(): 2.1e-06, 41.11% id in 90 aa.
 
    0.923
petC
Similar to Rhodospirillum rubrum cytochrome c1 precursor PetC SWALL:CY1_RHORU (SWALL:P23135) (272 aa) fasta scores: E(): 2.5e-07, 32.45% id in 228 aa, and to Ralstonia solanacearum putative cytochrome c1 precursor transmembrane protein PetC or Rsc2927 or Rs00164 SWALL:Q8XVA4 (EMBL:AL646072) (248 aa) fasta scores: E(): 4.8e-67, 65.07% id in 252 aa.
 
  
 0.727
BPSL0697
Putative periplasmic cytochrome c protein; Similar to Thiobacillus ferrooxidans cytochrome c-552 precursor Cyc1 SWALL:C552_THIFE (SWALL:P74917) (230 aa) fasta scores: E(): 3.5e-07, 26.63% id in 229 aa, and to Pseudomonas aeruginosa probable cytochrome c pa2482 SWALL:Q9I100 (EMBL:AE004676) (217 aa) fasta scores: E(): 3.4e-15, 37.05% id in 170 aa, and to Ralstonia solanacearum putative cytochrome c signal peptide protein rsc0197 or rs00629 SWALL:Q8Y2Y4 (EMBL:AL646058) (206 aa) fasta scores: E(): 6.3e-14, 37.71% id in 175 aa.
 
     0.703
BPSL1256
Similar to Pseudomonas aeruginosa probable cytochrome c pa2482 SWALL:Q9I100 (EMBL:AE004676) (217 aa) fasta scores: E(): 1e-14, 32.71% id in 214 aa, and to Ralstonia solanacearum putative cytochrome c signal peptide protein rsc0197 or rs00629 SWALL:Q8Y2Y4 (EMBL:AL646058) (206 aa) fasta scores: E(): 3.4e-14, 34.8% id in 204 aa.
 
     0.700
BPSL0461
Putative cytochrome oxidase assembly protein; Similar to Ralstonia solanacearum putative heme O oxygenase CtaA SWALL:Q8Y2G5 (EMBL:AL646058) (363 aa) fasta scores: E(): 4.5e-83, 63.63% id in 330 aa, and to Pseudomonas aeruginosa hypothetical protein pa0112 SWALL:Q9I720 (EMBL:AE004449) (357 aa) fasta scores: E(): 1.1e-50, 45.59% id in 329 aa.
 
     0.689
BPSL3354
tRNA-Arg; tRNA Arg anticodon CCG, Cove score 82.41.
 
   
 0.673
BPSL0460
Putative membrane protein; Similar to Ralstonia solanacearum probable transmembrane protein rsc0370 or rs03338 SWALL:Q8Y2G6 (EMBL:AL646058) (215 aa) fasta scores: E(): 6.2e-38, 52.7% id in 203 aa, and to Xanthomonas axonopodis hypothetical protein xac3881 SWALL:AAM38723 (EMBL:AE012037) (191 aa) fasta scores: E(): 6.1e-06, 26.56% id in 192 aa.
 
   
 0.649
BPSL1261
Putative cytochrome c related protein; Similar in its C-terminal region to Pseudomonas aeruginosa cytochrome c4 precursor pa5490 SWALL:CYC4_PSEAE (SWALL:P00106) (201 aa) fasta scores: E(): 3.8e-12, 34.09% id in 176 aa, and to Rhizobium meliloti putative cytochrome c class I protein, probably cytochrome c4 CycA or rb0945 or smb21367 SWALL:Q92UY9 (EMBL:AL603645) (374 aa) fasta scores: E(): 4.5e-08, 31.01% id in 187 aa. N-terminal region presents possible hydrophobic membrane spanning domains.
 
     0.648
BPSL2364
Putative membrane protein; Similar to Ralstonia solanacearum probable transmembrane protein rsp0971 or rs02303 SWALL:Q8XR88 (EMBL:AL646082) (406 aa) fasta scores: E(): 3.5e-25, 32.36% id in 411 aa, and to Rhizobium meliloti hypothetical protein ra0687 or sma1259 SWALL:Q92Z23 (EMBL:AE007256) (452 aa) fasta scores: E(): 1.2e-18, 30.42% id in 447 aa.
  
 
 0.644
BPSL1600
Putative cytochrome c-related lipoprotein; Similar to Xanthomonas axonopodis cytochrome c5 xac0273 SWALL:AAM35165 (EMBL:AE011652) (172 aa) fasta scores: E(): 2.8e-10, 42.85% id in 147 aa, and C-terminal region highly similar to Chlorobium limicola f.sp. thiosulfatophilum cytochrome c-555 SWALL:C555_CHLLT (SWALL:P00123) (86 aa) fasta scores: E(): 3.2e-07, 43.75% id in 80 aa.
 
   
 0.632
Your Current Organism:
Burkholderia pseudomallei
NCBI taxonomy Id: 272560
Other names: B. pseudomallei K96243, Burkholderia pseudomallei K96243, Burkholderia pseudomallei str. K96243, Burkholderia pseudomallei strain K96243
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