STRINGSTRING
BPSL1188 BPSL1188 BPSL1187 BPSL1187 BPSL3237 BPSL3237 BPSL2273 BPSL2273 BPSL2494 BPSL2494 BPSL2644 BPSL2644 BPSL0995 BPSL0995 BPSL1194 BPSL1194 BPSL2957 BPSL2957 BPSS1698 BPSS1698 BPSL0795 BPSL0795
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BPSL1188Similar to Ralstonia solanacearum putative transcription regulator protein rsc2086 or rs03651 SWALL:Q8XXM7 (EMBL:AL646068) (231 aa) fasta scores: E(): 3.1e-60, 65.45% id in 220 aa, and to Alcanivorax borkumensis PhaD SWALL:Q9F9H1 (EMBL:AF193866) (233 aa) fasta scores: E(): 4.6e-17, 33.03% id in 221 aa. (239 aa)    
Predicted Functional Partners:
BPSL1187
Putative decarboxylase; Similar to Pseudomonas aeruginosa hypothetical protein pa4923 SWALL:YDC3_PSEAE (SWALL:P48636) (195 aa) fasta scores: E(): 2.6e-39, 56.68% id in 187 aa, and to Rhodococcus fascians hypothetical 21.1 kDa protein in fasciation locus Fas6 SWALL:FAS6_RHOFA (SWALL:P46378) (198 aa) fasta scores: E(): 2.1e-28, 53.89% id in 154 aa. Note: This CDS is shorter in its N-terminal region than some of its database matches; Belongs to the LOG family.
       0.803
BPSL3237
Similar to Ralstonia solanacearum hypothetical protein Rsc3098 or Rs00551 SWALL:Q8XUT7 (EMBL:AL646073) (231 aa) fasta scores: E(): 1.2e-44, 59.34% id in 214 aa.
  
     0.613
BPSL2273
Conserved hypothetical protein; Similar to Ralstonia solanacearum putative hydrolase protein rsc1125 or rs04628 SWALL:Q8Y0B9 (EMBL:AL646062) (273 aa) fasta scores: E(): 1.6e-63, 58.88% id in 270 aa. Weakly similar to the C-terminal region of Mus musculus monoglyceride lipase MGLL SWALL:O35678 (EMBL:AJ001118) (303 aa) fasta scores: E(): 0.015, 25.96% id in 285 aa.
  
     0.603
BPSL2494
Putative membrane protein; Similar to Ralstonia solanacearum probable transmembrane protein rsc0929 or rs04485 SWALL:Q8Y0W4 (EMBL:AL646061) (151 aa) fasta scores: E(): 1.1e-29, 56.66% id in 150 aa.
  
     0.548
BPSL2644
Putative exported protein; Similar to Ralstonia solanacearum probable transmembrane protein rsc0700 or rs01605 SWALL:Q8Y1J0 (EMBL:AL646060) (204 aa) fasta scores: E(): 1.3e-26, 46.39% id in 194 aa.
  
     0.529
BPSL0995
Putative membrane protein; Similar to Ralstonia solanacearum putative signal peptide protein rsc2383 or rs06185 SWALL:Q8XWT7 (EMBL:AL646069) (1299 aa) fasta scores: E(): 3.6e-120, 42.81% id in 1371 aa, and to Neisseria meningitidis hypothetical protein nmb2135 SWALL:Q9JXB6 (EMBL:AE002561) (1405 aa) fasta scores: E(): 8.4e-29, 26.91% id in 1475 aa.
 
     0.527
BPSL1194
Putative membrane protein; Similar to Ralstonia solanacearum probable transmembrane protein rsc2079 or rs03644 SWALL:Q8XXN4 (EMBL:AL646068) (146 aa) fasta scores: E(): 2.5e-16, 50% id in 140 aa.
 
     0.518
BPSL2957
Similar to Ralstonia solanacearum hypothetical protein RSC2765 or RS00089 SWALL:Q8XVR4 (EMBL:AL646071) (198 aa) fasta scores: E(): 9e-39, 60.41% id in 192 aa. C-terminal region is similar to Xylella fastidiosa conserved hypothetical protein SWALL:Q87A41 (EMBL:AE012560) (138 aa) fasta scores: E(): 0.00017, 31.2% id in 125 aa. Possible alternative translational start site after codon 55.
  
     0.476
BPSS1698
Similar to Rhodobacter sphaeroides modification methylase RsrIM SWALL:MTR1_RHOSH (SWALL:P14751) (319 aa) fasta scores: E(): 4.1e-25, 38.96% id in 231 aa, and to Bacillus subtilis modification methylase BglIIM SWALL:MTB2_BACSU (SWALL:Q45489) (360 aa) fasta scores: E(): 3.3e-22, 35.03% id in 254 aa; Belongs to the N(4)/N(6)-methyltransferase family.
  
    0.460
BPSL0795
Putative membrane protein; Similar to Ralstonia solanacearum probable transmembrane protein rsc0569 or rs04896 SWALL:Q8Y1W8 (EMBL:AL646060) (107 aa) fasta scores: E(): 8.6e-16, 50.47% id in 105 aa.
  
     0.450
Your Current Organism:
Burkholderia pseudomallei
NCBI taxonomy Id: 272560
Other names: B. pseudomallei K96243, Burkholderia pseudomallei K96243, Burkholderia pseudomallei str. K96243, Burkholderia pseudomallei strain K96243
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