STRINGSTRING
BPSL1905 BPSL1905 BPSL1670 BPSL1670 BPSL0347 BPSL0347 BPSS1519 BPSS1519 BPSL1906 BPSL1906
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BPSL1905Similar to Rhizobium loti transposase mlr9643 SWALL:Q98P22 (EMBL:AP003017) (127 aa) fasta scores: E(): 1.8e-11, 34.82% id in 112 aa, and to Agrobacterium tumefaciens hypothetical 15.7 kDa protein SWALL:Q44424 (EMBL:M55562) (137 aa) fasta scores: E(): 2e-11, 35.71% id in 112 aa. (136 aa)    
Predicted Functional Partners:
BPSL1670
Putative transposase; Similar to the N-terminal region of Streptomyces coelicolor putative transposase sco0083 or scj11.12 SWALL:Q9RI92 (EMBL:AL109949) (282 aa) fasta scores: E(): 4.8e-27, 44.63% id in 233 aa, and to the central part of Burkholderia cepacia insertion element IS402 hypothetical 16.2 kDa protein SWALL:YI22_BURCE (SWALL:P24537) (147 aa) fasta scores: E(): 3.6e-26, 64.17% id in 134 aa.
 
     0.674
BPSL0347
Putative insertion element protein; No significant database matches to the full length CDS. C-terminal region is similar to Burkholderia cepacia insertion element IS402 hypothetical protein SWALL:YI22_BURCE (SWALL:P24537) (147 aa) fasta scores: E(): 2.1e-17, 53.53% id in 99 aa, and Ralstonia solanacearum probable tis1421-transposase orfa protein SWALL:Q8XGS3 (EMBL:AL646082) (134 aa) fasta scores: E(): 1.5e-14, 51.04% id in 96 aa.
 
     0.587
BPSS1519
Similar to Burkholderia cepacia putative transposase for insertion sequence element IS402 SWALL:T402_BURCE (SWALL:P24536) (211 aa) fasta scores: E(): 1.4e-21, 55.63% id in 133 aa, and to Pseudomonas glumae transposase SWALL:Q9KVZ9 (EMBL:AB046460) (265 aa) fasta scores: E(): 7.9e-20, 52.71% id in 129 aa.
  
     0.506
BPSL1906
Similar to Ralstonia solanacearum hypothetical protein rsc1272 or rs02810 SWALL:Q8XZX3 (EMBL:AL646063) (365 aa) fasta scores: E(): 1.1e-121, 80% id in 365 aa, and to Neisseria meningitidis putative nucleotide-binding protein nma1520 or nmb1306 SWALL:Q9JRK2 (EMBL:AL162756) (383 aa) fasta scores: E(): 1.7e-64, 47.72% id in 352 aa.
       0.468
Your Current Organism:
Burkholderia pseudomallei
NCBI taxonomy Id: 272560
Other names: B. pseudomallei K96243, Burkholderia pseudomallei K96243, Burkholderia pseudomallei str. K96243, Burkholderia pseudomallei strain K96243
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