STRINGSTRING
BPSL2033 BPSL2033 BPSL2034 BPSL2034 BPSL3147 BPSL3147 BPSS1678 BPSS1678 BPSS0249 BPSS0249
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BPSL2033Putative transport-related membrane protein; Similar to Alcaligenes eutrophus probable 4-methylmuconolactone transporter MmlH SWALL:MMLH_ALCEU (SWALL:O51798) (428 aa) fasta scores: E(): 5.4e-40, 43.51% id in 416 aa, and to Ralstonia solanacearum probable metabolite transport transmembrane protein rsp0234 or rs05189 SWALL:Q8XT81 (EMBL:AL646077) (416 aa) fasta scores: E(): 1.7e-106, 66.26% id in 412 aa. (428 aa)    
Predicted Functional Partners:
BPSL2034
Putative hydrolase; Similar to Ralstonia solanacearum probable hydrolase transmembrane protein rsp0233 or rs05190 SWALL:Q8XT82 (EMBL:AL646077) (302 aa) fasta scores: E(): 1.6e-52, 50.55% id in 269 aa, and to Campylobacter jejuni hypothetical protein cj0556 SWALL:Q9PHV9 (EMBL:AL139075) (265 aa) fasta scores: E(): 4.1e-24, 30.48% id in 269 aa.
 
    0.747
BPSL3147
Putative lipoprotein; Similar to Ralstonia solanacearum probable lipoprotein precursor VacJ or Rsc2959 or Rs01340 SWALL:Q8XV72 (EMBL:AL646072) (269 aa) fasta scores: E(): 1.5e-30, 52.61% id in 249 aa, and to Shigella flexneri VacJ lipoprotein or Sf2424 SWALL:VACJ_SHIFL (SWALL:P43262) (251 aa) fasta scores: E(): 1.7e-15, 39.16% id in 240 aa.
      
 0.686
BPSS1678
Similar to Ralstonia solanacearum putative ribonuclease RNAse BN rsp1664 or rs02223 SWALL:Q8XPH6 (EMBL:AL646086) (324 aa) fasta scores: E(): 3.3e-35, 38.54% id in 288 aa, and to Escherichia coli, Escherichia coli O6, and Escherichia coli O157:H7 ribonuclease BN Rbn or b3886 or c4833 or z5425 or ecs4809 SWALL:RBN_ECOLI (SWALL:P32146) (290 aa) fasta scores: E(): 8.5e-07, 27.06% id in 303 aa.
      
 0.499
BPSS0249
Putative ABC transport system, substrate-binding exported protein; Similar to Ralstonia solanacearum probable solute-binding periplasmic rsc1791 or rs04190 SWALL:Q8XYG7 (EMBL:AL646066) (343 aa) fasta scores: E(): 1.5e-37, 37.27% id in 330 aa, and to Campylobacter jejuni putative periplasmic solute-binding protein cj0727 SWALL:Q9PPI0 (EMBL:AL139076) (348 aa) fasta scores: E(): 8.9e-28, 31.05% id in 351 aa.
 
    0.431
Your Current Organism:
Burkholderia pseudomallei
NCBI taxonomy Id: 272560
Other names: B. pseudomallei K96243, Burkholderia pseudomallei K96243, Burkholderia pseudomallei str. K96243, Burkholderia pseudomallei strain K96243
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