STRINGSTRING
BPSL2063 BPSL2063 BPSL2061 BPSL2061 BPSL2062 BPSL2062 BPSL2064 BPSL2064 BPSL2060 BPSL2060 BPSL2406 BPSL2406 BPSS1442 BPSS1442 BPSS1443 BPSS1443 lepB lepB lspA lspA
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BPSL2063Putative membrane protein; Weakly similar to Rhizobium meliloti hypothetical protein r00458 r00458 or smc01708 SWALL:Q92KQ7 (EMBL:AL591783) (1291 aa) fasta scores: E(): 4.5e-25, 29.01% id in 1282 aa, and to and internal region of Rhizobium loti hypothetical protein Mll2848 mll2848 SWALL:Q98HJ2 (EMBL:AP003000) (1953 aa) fasta scores: E(): 6.9e-31, 31.24% id in 1258 aa. (1090 aa)    
Predicted Functional Partners:
BPSL2061
Conserved hypothetical protein; Similar to the C-terminal region of Caulobacter crescentus FlbA protein or cc1457 SWALL:FLBA_CAUCR (SWALL:P21296) (596 aa) fasta scores: E(): 3.1e-20, 30.36% id in 494 aa, and to Ralstonia solanacearum hypothetical protein rsc3164 rsc3164 or rs00434 SWALL:Q8XUM3 (EMBL:AL646074) (387 aa) fasta scores: E(): 5.2e-11, 34.16% id in 322 aa.
       0.556
BPSL2062
OmpA family protein; Similar to Escherichia vulneris outer membrane protein II OmpA SWALL:Q47880 (EMBL:M63350) (244 aa) fasta scores: E(): 1.3e-14, 35% id in 220 aa. C-terminal region is similar to the C-terminus of Klebsiella pneumoniae outer membrane protein a precursor OmpA SWALL:OMPA_KLEPN (SWALL:P24017) (344 aa) fasta scores: E(): 1.3e-15, 38.69% id in 199 aa.
       0.556
BPSL2064
Hypothetical protein; No significant database matches.
       0.548
BPSL2060
Conserved hypothetical protein; Similar to Ralstonia solanacearum putative HNS-like transcription regulator protein rsp0335 or rs00711 SWALL:Q8XSY2 (EMBL:AL646078) (96 aa) fasta scores: E(): 9.1e-05, 36.55% id in 93 aa.
       0.532
BPSL2406
Putative membrane protein; Similar to Pseudomonas aeruginosa hypothetical protein pa4828 SWALL:Q9HUY2 (EMBL:AE004896) (151 aa) fasta scores: E(): 6.7e-09, 32.43% id in 148 aa, and to Synechocystis sp. hypothetical protein slr1186 SWALL:P74715 (EMBL:D90917) (148 aa) fasta scores: E(): 8.4e-07, 30.46% id in 151 aa.
  
     0.518
BPSS1442
Hypothetical protein; No significant database matches.
      
 0.499
BPSS1443
Hypothetical protein; No significant database matches.
      
 0.499
lepB
Similar to Escherichia coli signal peptidase I LepB SWALL:LEP_ECOLI (SWALL:P00803) (324 aa) fasta scores: E(): 4.5e-22, 43.43% id in 320 aa, and to Ralstonia solanacearum probable signal peptidase I rsc1061 or rs04147 SWALL:Q8Y0I3 (EMBL:AL646062) (305 aa) fasta scores: E(): 6.2e-77, 64.05% id in 306 aa; Belongs to the peptidase S26 family.
      
 0.497
lspA
Signal peptidase II; This protein specifically catalyzes the removal of signal peptides from prolipoproteins; Belongs to the peptidase A8 family.
      
 0.471
Your Current Organism:
Burkholderia pseudomallei
NCBI taxonomy Id: 272560
Other names: B. pseudomallei K96243, Burkholderia pseudomallei K96243, Burkholderia pseudomallei str. K96243, Burkholderia pseudomallei strain K96243
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