STRINGSTRING
BPSL2088 BPSL2088 BPSL2087A BPSL2087A BPSL2086 BPSL2086 BPSL1388 BPSL1388
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BPSL2088Hypothetical protein; Very low and partial similarity to Pseudomonas aeruginosa hypothetical protein pa3908 SWALL:Q9HXA5 (EMBL:AE004808) (239 aa) fasta scores: E(): 0.001, 25.43% id in 228 aa. (240 aa)    
Predicted Functional Partners:
BPSL2087A
Conserved hypothetical protein (fragment); Possible partial CDS. Similar to the C-terminal region of Pseudomonas aeruginosa hypothetical protein Pa3906 pa3906 SWALL:Q9HXA7 (EMBL:AE004808) (127 aa) fasta scores: E(): 6.2e-05, 35.39% id in 113 aa. Note: This CDS lacks of an appropriate stop codon.
       0.782
BPSL2086
Conserved hypothetical protein (fragment); Partial CDS. Similar to the N-terminal region of Bacteriophage phiE125 gp29 29 SWALL:Q8W6S2 (EMBL:AF447491) (186 aa) fasta scores: E(): 3e-12, 50.57% id in 87 aa, and to the full length of Pseudomonas aeruginosa hypothetical protein Pa1508 pa1508 SWALL:Q9I3K4 (EMBL:AE004579) (86 aa) fasta scores: E(): 5.9e-11, 50% id in 88 aa. Note: This CDS lacks a stop codon.
  
    0.662
BPSL1388
Hypothetical protein; Low similarity to Pseudomonas aeruginosa hypothetical protein pa3905 SWALL:Q9HXA8 (EMBL:AE004808) (175 aa) fasta scores: E(): 0.0056, 32.71% id in 107 aa.
  
    0.464
Your Current Organism:
Burkholderia pseudomallei
NCBI taxonomy Id: 272560
Other names: B. pseudomallei K96243, Burkholderia pseudomallei K96243, Burkholderia pseudomallei str. K96243, Burkholderia pseudomallei strain K96243
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