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suhB suhB BPSL1988 BPSL1988 BPSL1989 BPSL1989 plcN2 plcN2 BPSL1876 BPSL1876 plcN plcN BPSS0067 BPSS0067 BPSS1312 BPSS1312 nusG nusG rpoZ rpoZ nusB nusB
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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Gene Fusion
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Experiments
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[Homology]
Score
suhBInositol-1-monophosphatase; Similar to Escherichia coli, Escherichia coli O6, and Escherichia coli O157:H7 inositol-1-monophosphatase SuhB or SsyA SWALL:SUHB_ECOLI (SWALL:P22783) (267 aa) fasta scores: E(): 1.7e-47, 51.96% id in 254 aa, and to Ralstonia solanacearum probable inositol monophosphatase rsc1160 or rs04755 SWALL:Q8Y084 (EMBL:AL646063) (270 aa) fasta scores: E(): 2.7e-70, 68.16% id in 267 aa. (267 aa)    
Predicted Functional Partners:
BPSL1988
Putative oxidoreductase; Similar to Clostridium perfringens probable dehydrogenase cpe0093 SWALL:Q8XP72 (EMBL:AP003185) (349 aa) fasta scores: E(): 5.5e-46, 39.05% id in 338 aa, and to Rhizobium meliloti myo-inositol 2-dehydrogenase IdhA or rb1194 or smb20899 SWALL:MI2D_RHIME (SWALL:O68965) (330 aa) fasta scores: E(): 2.5e-27, 34.21% id in 342 aa. Note: Also similar to the upstream CDS, BPSL1989 (344 aa) fasta scores: E(): 7.2e-29, 35.362% identity in 345 aa overlap.
    
 0.914
BPSL1989
Putative oxidoreductase; Similar to Caulobacter crescentus myo-inositol 2-dehydrogenase cc1296 SWALL:Q9A8Q7 (EMBL:AE005804) (328 aa) fasta scores: E(): 2.1e-58, 49.54% id in 327 aa, and to Rhizobium meliloti myo-inositol 2-dehydrogenase IdhA or rb1194 or smb20899 SWALL:MI2D_RHIME (SWALL:O68965) (330 aa) fasta scores: E(): 1.1e-51, 46.64% id in 328 aa. Note: Also similar to the downstream CDS, BPSL1988 (346 aa) fasta scores: E(): 4.5e-27, 35.362% identity in 345 aa overlap.
    
 0.914
plcN2
Similar to Pseudomonas aeruginosa non-hemolytic phospholipase C precursor PlcN SWALL:PHLN_PSEAE (SWALL:P15713) (692 aa) fasta scores: E(): 2.5e-77, 48.87% id in 708 aa, and to Burkholderia pseudomallei non-hemolytic phospholipase C precursor PlcN SWALL:PHLN_BURPS (SWALL:Q9RGS8) (700 aa) fasta scores: E(): 2.2e-128, 52.84% id in 721 aa. Similar to BPSL2403, 52.705% identity (56.632% ungapped) in 721 aa overlap.
     
  0.900
BPSL1876
Similar to Arabidopsis thaliana putative phospholipase t12j13.18 or t21p5.4 SWALL:Q9S816 (EMBL:AC009327) (521 aa) fasta scores: E(): 3.4e-32, 30.87% id in 502 aa, and to Sulfolobus solfataricus acid phosphatase, putative sso2789 SWALL:Q97V43 (EMBL:AE006873) (511 aa) fasta scores: E(): 5.1e-08, 25.63% id in 476 aa.
     
  0.900
plcN
Hypothetical protein (pseudogene); Hydrolyzes phosphatidylserine as well as phosphatidylcholine.
     
  0.900
BPSS0067
Similar to Pseudomonas aeruginosa non-hemolytic phospholipase C precursor PlcN or pa3319 SWALL:PHLN_PSEAE (SWALL:P15713) (692 aa) fasta scores: E(): 6e-54, 53.29% id in 728 aa, and to Burkholderia pseudomallei non-hemolytic phospholipase C precursor PlcN SWALL:PHLN_BURPS (SWALL:Q9RGS8) (700 aa) fasta scores: E(): 4e-39, 45.43% id in 744 aa.
     
  0.900
BPSS1312
Hypothetical protein; Similar to the N-terminal regions of Arabidopsis thaliana hypothetical 59.0 kDa protein at3g03520 SWALL:Q8VZ53 (EMBL:AY065242) (523 aa) fasta scores: E(): 4.6e-40, 35.03% id in 471 aa, and to Arabidopsis thaliana t21p5.6 protein t21p5.6 or at3g03520 SWALL:Q9SRQ6 (EMBL:AC009895) (523 aa) fasta scores: E(): 4.6e-40, 35.03% id in 471 aa.
     
  0.900
nusG
Transcription antitermination protein NusG; Participates in transcription elongation, termination and antitermination.
   
 
 0.846
rpoZ
DNA-directed RNA polymerase omega chain; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits.
 
   0.808
nusB
Probable N utilization substance protein B; Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons.
  
 
 0.804
Your Current Organism:
Burkholderia pseudomallei
NCBI taxonomy Id: 272560
Other names: B. pseudomallei K96243, Burkholderia pseudomallei K96243, Burkholderia pseudomallei str. K96243, Burkholderia pseudomallei strain K96243
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