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cspD cspD BPSL0763 BPSL0763 rpoZ rpoZ rpoB rpoB rpoA rpoA rpsL rpsL rpmE2 rpmE2 rpsQ rpsQ rpsE rpsE rpmJ rpmJ rplC rplC
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cspDCold shock-like protein CspD; May play a regulatory role in chromosomal replication in nutrient-depleted cells. Similar to Escherichia coli cold shock-like protein CspD or CspH or b0880 or z1117 or ecs0966 SWALL:CSPD_ECOLI (SWALL:P24245) (74 aa) fasta scores: E(): 4.2e-16, 62.68% id in 67 aa. (67 aa)    
Predicted Functional Partners:
BPSL0763
Putative helicase SNF2 family protein; Similar to Bacteroides nodosus putative DEAH ATP-dependent helicase SWALL:O32494 (EMBL:U20246) (965 aa) fasta scores: E(): 2.4e-28, 28.84% id in 780 aa, and to Xanthomonas campestris helicase xcc0524 SWALL:AAM39840 (EMBL:AE012150) (967 aa) fasta scores: E(): 1.8e-11, 25.36% id in 962 aa, and to Halobacterium sp. similar to Escherichia coli vng5141g or vng6139G SWALL:O52003 (EMBL:AF016485) (979 aa) fasta scores: E(): 1.9e-10, 27.33% id in 995 aa. Possible alternative translational start site.
  
 0.718
rpoZ
DNA-directed RNA polymerase omega chain; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits.
   
 
 0.605
rpoB
DNA-directed RNA polymerase beta chain; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
 
 0.599
rpoA
DNA-directed RNA polymerase alpha chain; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
 
 0.577
rpsL
30S ribosomal protein S12; With S4 and S5 plays an important role in translational accuracy.
   
 
 0.489
rpmE2
50S ribosomal protein L31; Similar to Escherichia coli, and Escherichia coli O157:H7 50S ribosomal protein L31 type B-1 RpmE2 or b0296 or z0364 or ecs0327 SWALL:R31B_ECOLI (SWALL:P71302) (87 aa) fasta scores: E(): 3.7e-11, 47.61% id in 84 aa, and to Ralstonia solanacearum 50S ribosomal protein L31 type B rsc1182 or rs05714 SWALL:Q8Y062 (EMBL:AL646063) (87 aa) fasta scores: E(): 1.3e-23, 75% id in 88 aa.
  
 
 0.438
rpsQ
30S ribosomal protein S17; One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA.
   
 
 0.437
rpsE
30S ribosomal protein S5; With S4 and S12 plays an important role in translational accuracy; Belongs to the universal ribosomal protein uS5 family.
   
 
 0.425
rpmJ
Similar to Escherichia coli 50S ribosomal protein L36 RpmJ or b3299 or z4669 or ecs4164 or stm3419 or sty4379 SWALL:RL36_ECOLI (SWALL:P21194) (38 aa) fasta scores: E(): 3.1e-12, 76.31% id in 38 aa; Belongs to the bacterial ribosomal protein bL36 family.
   
 
 0.423
rplC
50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit.
   
   0.405
Your Current Organism:
Burkholderia pseudomallei
NCBI taxonomy Id: 272560
Other names: B. pseudomallei K96243, Burkholderia pseudomallei K96243, Burkholderia pseudomallei str. K96243, Burkholderia pseudomallei strain K96243
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