Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| rplM | rplS | BPSL2911 | BPSL2489 | 50S ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | 50S ribosomal protein L19; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site. | 0.996 |
| rplM | rplU | BPSL2911 | BPSL3005 | 50S ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | 50S ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family. | 0.995 |
| rplM | rpmB | BPSL2911 | BPSL0916 | 50S ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | 50S ribosomal protein L28; Similar to Escherichia coli, and Escherichia coli O157:H7 50S ribosomal protein L28 RpmB or b3637 or z5061 or ecs4512 SWALL:RL28_ECOLI (SWALL:P02428) (77 aa) fasta scores: E(): 1.1e-20, 73.33% id in 75 aa, and to Ralstonia solanacearum 50S ribosomal protein L28 RpmB or rsc2445 or rs01349 SWALL:RL28_RALSO (SWALL:Q8XWM9) (77 aa) fasta scores: E(): 1.1e-28, 94.73% id in 76 aa, and to Neisseria meningitidis 50S ribosomal protein L28 RpmB or nma2166 or nmb0321 SWALL:RL28_NEIMA (SWALL:Q9JQQ3) (77 aa) fasta scores: E(): 1.7e-27, 90.9% id in 77 aa; Belongs to the bac [...] | 0.994 |
| rplM | rpmF | BPSL2911 | BPSL2444 | 50S ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | 50S ribosomal protein L32; Similar to Escherichia coli, Escherichia coli O157:H7, Salmonella typhimurium, and Salmonella typhi 50S ribosomal protein L32 RpmF SWALL:RL32_ECOLI (SWALL:P02435) (56 aa) fasta scores: E(): 2.7e-11, 62.96% id in 54 aa, and to Ralstonia solanacearum 50S ribosomal protein L32 rsc1048 or rs04194 SWALL:RL32_RALSO (SWALL:Q8Y0J6) (58 aa) fasta scores: E(): 9.8e-22, 87.93% id in 58 aa; Belongs to the bacterial ribosomal protein bL32 family. | 0.992 |
| rplM | rpmI | BPSL2911 | BPSL1943 | 50S ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | 50S ribosomal protein L35; Similar to Escherichia coli, Escherichia coli O157:H7, Salmonella typhimurium, and Salmonella typhi 50S ribosomal protein L35 RpmI or b1717 or z2746 or ecs2424 or stm1335 or sty1776 SWALL:RL35_ECOLI (SWALL:P07085) (64 aa) fasta scores: E(): 1.1e-07, 53.12% id in 64 aa, and to Ralstonia solanacearum 50S ribosomal protein L35 rsc1579 or rs03941 SWALL:RL35_RALSO (SWALL:Q8XZ27) (65 aa) fasta scores: E(): 9.7e-21, 78.46% id in 65 aa; Belongs to the bacterial ribosomal protein bL35 family. | 0.993 |
| rplM | rpsF | BPSL2911 | BPSL1458 | 50S ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | Putative 30S ribosomal protein S6; Binds together with S18 to 16S ribosomal RNA. | 0.993 |
| rplM | rpsO | BPSL2911 | BPSL1206 | 50S ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | 30S ribosomal protein S15; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it helps nucleate assembly of the platform of the 30S subunit by binding and bridging several RNA helices of the 16S rRNA. | 0.997 |
| rplM | rpsP | BPSL2911 | BPSL2492 | 50S ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | 30S ribosomal protein S16; Similar to Escherichia coli, and Escherichia coli O157:H7 30S ribosomal protein S16 RpsP SWALL:RS16_ECOLI (SWALL:P02372) (82 aa) fasta scores: E(): 1.1e-15, 58.02% id in 81 aa, and to Ralstonia solanacearum 30S ribosomal protein S16 rsc0933 or rs04481 SWALL:RS16_RALSO (SWALL:Q8Y0W0) (84 aa) fasta scores: E(): 5.4e-26, 83.33% id in 84 aa; Belongs to the bacterial ribosomal protein bS16 family. | 0.996 |
| rplM | rpsT | BPSL2911 | BPSL0871 | 50S ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | Putative 30S ribosomal protein S20; Binds directly to 16S ribosomal RNA. | 0.993 |
| rplM | rpsU | BPSL2911 | BPSL3318 | 50S ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | 30S ribosomal protein S21; Previously characterised as Burkholderia pseudomallei 30S ribosomal protein S21 RpsU SWALL:RS21_BURPS (SWALL:P70943) (70 aa) fasta scores: E(): 1.8e-22, 100% id in 70 aa. Similar to Escherichia coli 30S ribosomal protein S21 SWALL:RS21_ECOLI (SWALL:P02379) (70 aa) fasta scores: E(): 8.8e-09, 61.4% id in 57 aa; Belongs to the bacterial ribosomal protein bS21 family. | 0.927 |
| rplS | rplM | BPSL2489 | BPSL2911 | 50S ribosomal protein L19; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site. | 50S ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | 0.996 |
| rplS | rplU | BPSL2489 | BPSL3005 | 50S ribosomal protein L19; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site. | 50S ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family. | 0.996 |
| rplS | rpmB | BPSL2489 | BPSL0916 | 50S ribosomal protein L19; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site. | 50S ribosomal protein L28; Similar to Escherichia coli, and Escherichia coli O157:H7 50S ribosomal protein L28 RpmB or b3637 or z5061 or ecs4512 SWALL:RL28_ECOLI (SWALL:P02428) (77 aa) fasta scores: E(): 1.1e-20, 73.33% id in 75 aa, and to Ralstonia solanacearum 50S ribosomal protein L28 RpmB or rsc2445 or rs01349 SWALL:RL28_RALSO (SWALL:Q8XWM9) (77 aa) fasta scores: E(): 1.1e-28, 94.73% id in 76 aa, and to Neisseria meningitidis 50S ribosomal protein L28 RpmB or nma2166 or nmb0321 SWALL:RL28_NEIMA (SWALL:Q9JQQ3) (77 aa) fasta scores: E(): 1.7e-27, 90.9% id in 77 aa; Belongs to the bac [...] | 0.993 |
| rplS | rpmF | BPSL2489 | BPSL2444 | 50S ribosomal protein L19; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site. | 50S ribosomal protein L32; Similar to Escherichia coli, Escherichia coli O157:H7, Salmonella typhimurium, and Salmonella typhi 50S ribosomal protein L32 RpmF SWALL:RL32_ECOLI (SWALL:P02435) (56 aa) fasta scores: E(): 2.7e-11, 62.96% id in 54 aa, and to Ralstonia solanacearum 50S ribosomal protein L32 rsc1048 or rs04194 SWALL:RL32_RALSO (SWALL:Q8Y0J6) (58 aa) fasta scores: E(): 9.8e-22, 87.93% id in 58 aa; Belongs to the bacterial ribosomal protein bL32 family. | 0.994 |
| rplS | rpmI | BPSL2489 | BPSL1943 | 50S ribosomal protein L19; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site. | 50S ribosomal protein L35; Similar to Escherichia coli, Escherichia coli O157:H7, Salmonella typhimurium, and Salmonella typhi 50S ribosomal protein L35 RpmI or b1717 or z2746 or ecs2424 or stm1335 or sty1776 SWALL:RL35_ECOLI (SWALL:P07085) (64 aa) fasta scores: E(): 1.1e-07, 53.12% id in 64 aa, and to Ralstonia solanacearum 50S ribosomal protein L35 rsc1579 or rs03941 SWALL:RL35_RALSO (SWALL:Q8XZ27) (65 aa) fasta scores: E(): 9.7e-21, 78.46% id in 65 aa; Belongs to the bacterial ribosomal protein bL35 family. | 0.993 |
| rplS | rpsF | BPSL2489 | BPSL1458 | 50S ribosomal protein L19; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site. | Putative 30S ribosomal protein S6; Binds together with S18 to 16S ribosomal RNA. | 0.997 |
| rplS | rpsO | BPSL2489 | BPSL1206 | 50S ribosomal protein L19; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site. | 30S ribosomal protein S15; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it helps nucleate assembly of the platform of the 30S subunit by binding and bridging several RNA helices of the 16S rRNA. | 0.996 |
| rplS | rpsP | BPSL2489 | BPSL2492 | 50S ribosomal protein L19; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site. | 30S ribosomal protein S16; Similar to Escherichia coli, and Escherichia coli O157:H7 30S ribosomal protein S16 RpsP SWALL:RS16_ECOLI (SWALL:P02372) (82 aa) fasta scores: E(): 1.1e-15, 58.02% id in 81 aa, and to Ralstonia solanacearum 30S ribosomal protein S16 rsc0933 or rs04481 SWALL:RS16_RALSO (SWALL:Q8Y0W0) (84 aa) fasta scores: E(): 5.4e-26, 83.33% id in 84 aa; Belongs to the bacterial ribosomal protein bS16 family. | 0.997 |
| rplS | rpsT | BPSL2489 | BPSL0871 | 50S ribosomal protein L19; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site. | Putative 30S ribosomal protein S20; Binds directly to 16S ribosomal RNA. | 0.988 |
| rplS | rpsU | BPSL2489 | BPSL3318 | 50S ribosomal protein L19; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site. | 30S ribosomal protein S21; Previously characterised as Burkholderia pseudomallei 30S ribosomal protein S21 RpsU SWALL:RS21_BURPS (SWALL:P70943) (70 aa) fasta scores: E(): 1.8e-22, 100% id in 70 aa. Similar to Escherichia coli 30S ribosomal protein S21 SWALL:RS21_ECOLI (SWALL:P02379) (70 aa) fasta scores: E(): 8.8e-09, 61.4% id in 57 aa; Belongs to the bacterial ribosomal protein bS21 family. | 0.934 |
page 1 of 6