STRINGSTRING
BPSL3393 BPSL3393 BPSL3368 BPSL3368 eutC eutC eutB eutB BPSL3373 BPSL3373 acoD acoD fur-2 fur-2 fur fur
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BPSL3393Conserved hypothetical protein; Similar to many hypotheticals though shorter in the N-terminus. Similar to Ralstonia solanacearum hypothetical protein Rsc3313 or Rs02543 SWALL:Q8XU80 (EMBL:AL646074) (153 aa) fasta scores: E(): 3.7e-14, 52.47% id in 101 aa, and to Escherichia coli protein YccU or b0965 SWALL:YCCU_ECOLI (SWALL:P75874) (137 aa) fasta scores: E(): 1.8e-11, 46.8% id in 94 aa. Possible gene remnant. (104 aa)    
Predicted Functional Partners:
BPSL3368
Putative AraC-family transcriptional regulator; Similar to Salmonella typhimurium ethanolamine operon regulatory protein EutR or Stm2454 SWALL:EUTR_SALTY (SWALL:Q9ZFU7) (350 aa) fasta scores: E(): 4.5e-37, 41.08% id in 314 aa.
      
 0.686
eutC
Similar to Salmonella typhimurium ethanolamine ammonia-lyase light chain EutC or Stm2457 SWALL:EUTC_SALTY (SWALL:P19265) (298 aa) fasta scores: E(): 9.2e-18, 38.42% id in 216 aa, and to Ralstonia solanacearum ethanolamine ammonia-lyase light chain EutC or Rsc3126 or Rs00477 SWALL:Q8XUR0 (EMBL:AL646073) (270 aa) fasta scores: E(): 9.8e-46, 55.64% id in 257 aa; Belongs to the EutC family.
      
 0.686
eutB
Similar to Salmonella typhimurium ethanolamine ammonia-lyase heavy chain EutB or Stm2458 SWALL:EUTB_SALTY (SWALL:P19264) (453 aa) fasta scores: E(): 3.2e-85, 52.24% id in 446 aa.
      
 0.686
BPSL3373
Putative ethanolamine permease; Lies upstream of a CDS for ethanolamine utilisation. Similar to Xanthomonas campestris ethanolamin permease EutP or Xcc2259 SWALL:AAM41538 (EMBL:AE012333) (454 aa) fasta scores: E(): 3.4e-119, 72.66% id in 428 aa, and to Rhodococcus erythropolis ethanolamine permease EutP SWALL:Q53148 (EMBL:L24492) (488 aa) fasta scores: E(): 1.6e-38, 35.46% id in 454 aa.
      
 0.686
acoD
Similar to Alcaligenes eutrophus acetaldehyde dehydrogenase II AcoD SWALL:DHA2_ALCEU (SWALL:P46368) (506 aa) fasta scores: E(): 5.2e-172, 81.02% id in 506 aa.
      
 0.576
fur-2
Putative Fur family transcriptional regulator; Similar to Escherichia coli zinc uptake regulation protein Zur or b4046 SWALL:ZUR_ECOLI (SWALL:P32692) (171 aa) fasta scores: E(): 2.7e-12, 33.57% id in 137 aa, and to Pseudomonas aeruginosa transcriptional regulator Np20 or pa5499 SWALL:Q9HT74 (EMBL:AE004962) (167 aa) fasta scores: E(): 6e-21, 42.17% id in 147 aa. Possible alternative translational start sites; Belongs to the Fur family.
  
    0.561
fur
Ferric uptake regulator; Previously sequenced as Burkholderia pseudomallei ferric uptake regulator Fur SWALL:Q9Z5Z9 (EMBL:AF117238) (142 aa) fasta scores: E(): 8.2e-57, 100% id in 142 aa. Highly similar to Escherichia coli, Escherichia coli O6, and Escherichia coli O157:H7 ferric uptake regulation protein Fur or b0683 or c0770 or z0831 or ecs0714 SWALL:FUR_ECOLI (SWALL:P06975) (148 aa) fasta scores: E(): 8.1e-29, 55% id in 140 aa; Belongs to the Fur family.
  
    0.561
Your Current Organism:
Burkholderia pseudomallei
NCBI taxonomy Id: 272560
Other names: B. pseudomallei K96243, Burkholderia pseudomallei K96243, Burkholderia pseudomallei str. K96243, Burkholderia pseudomallei strain K96243
Server load: low (20%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.