STRINGSTRING
BPSS0009 BPSS0009 BPSS1964 BPSS1964 BPSS0008 BPSS0008 cynS cynS
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BPSS0009Similar to Agrobacterium tumefaciens hypothetical protein atu5387 or agr_pat_559 SWALL:Q8UJT8 (EMBL:AE008960) (154 aa) fasta scores: E(): 9.4e-52, 76.31% id in 152 aa, and to Pseudomonas aeruginosa hypothetical protein pa5395 SWALL:Q9HTG9 (EMBL:AE004952) (156 aa) fasta scores: E(): 6.3e-51, 74.19% id in 155 aa. (159 aa)    
Predicted Functional Partners:
BPSS1964
Similar to Pseudomonas aeruginosa hypothetical protein pa3036 SWALL:Q9HZH2 (EMBL:AE004728) (310 aa) fasta scores: E(): 2.6e-45, 49.19% id in 311 aa, and to Rhizobium meliloti hypothetical protein rb0009 or smb20006 SWALL:Q92XF2 (EMBL:AL603642) (317 aa) fasta scores: E(): 3.5e-41, 48.14% id in 297 aa. Note: C-terminal region presents no simi;arities to any of the database macthes and contains repeat regions.
 
     0.718
BPSS0008
Putative TetR-family regulatory protein; Similar to Anabaena sp. transcriptional regulator all7523 SWALL:Q8ZSI7 (EMBL:AP003602) (190 aa) fasta scores: E(): 1.8e-19, 35.26% id in 190 aa, and to Pseudomonas aeruginosa probable transcriptional regulator pa3034 SWALL:Q9HZH4 (EMBL:AE004728) (185 aa) fasta scores: E(): 5.7e-19, 41.53% id in 183 aa.
 
     0.645
cynS
Cyanate hydratase; Catalyzes the reaction of cyanate with bicarbonate to produce ammonia and carbon dioxide; Belongs to the cyanase family.
 
     0.409
Your Current Organism:
Burkholderia pseudomallei
NCBI taxonomy Id: 272560
Other names: B. pseudomallei K96243, Burkholderia pseudomallei K96243, Burkholderia pseudomallei str. K96243, Burkholderia pseudomallei strain K96243
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