STRINGSTRING
BPSS0089 BPSS0089 BPSS0504 BPSS0504 BPSL1661 BPSL1661 BPSL2699 BPSL2699 BPSS0090 BPSS0090
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
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Gene Fusion
Cooccurrence
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Experiments
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[Homology]
Score
BPSS0089Putative exported protein; Similar to Ralstonia solanacearum putative transmembrane protein rsp0161 or rs05517 SWALL:Q8XTF1 (EMBL:AL646076) (517 aa) fasta scores: E(): 3.2e-115, 57.32% id in 485 aa, and to Xanthomonas axonopodis hypothetical protein xac3119 SWALL:AAM37964 (EMBL:AE011956) (504 aa) fasta scores: E(): 2.5e-104, 53.07% id in 471 aa. (495 aa)    
Predicted Functional Partners:
BPSS0504
Putative membrane protein; Similar to Ralstonia solanacearum probable transmembrane protein rsp0134 or rs02986 SWALL:Q8XTH6 (EMBL:AL646076) (361 aa) fasta scores: E(): 9.4e-72, 58.68% id in 351 aa, and to Neisseria meningitidis putative integral membrane protein nma0079 SWALL:Q9JX36 (EMBL:AL162752) (375 aa) fasta scores: E(): 8.9e-27, 34.57% id in 350 aa.
  
     0.470
BPSL1661
Putative hemolysin-related protein; Similar to the C-terminal region of Ralstonia solanacearum putative hemagglutinin/hemolysin-related protein rsp1180 or rs05070 SWALL:Q8XQP2 (EMBL:AL646083) (4106 aa) fasta scores: E(): 6.4e-92, 30.67% id in 3218 aa, and also to the C-terminal region of Escherichia coli O157:H7 putative RTX family exoprotein z0615 SWALL:Q8X4H5 (EMBL:AE005229) (5188 aa) fasta scores: E(): 4e-38, 26.08% id in 3209 aa. Note: Contains a repeat region between residue 538 and residue 1362.
  
     0.418
BPSL2699
Putative exported protein; Similar to Ralstonia solanacearum probable signal peptide protein rsp0803 or rs01904 SWALL:Q8XRM8 (EMBL:AL646081) (667 aa) fasta scores: E(): 4.3e-26, 34.31% id in 746 aa. Note the product of this CDS is highly repetitive with a 4.5 X STLQNAAANNPLSGVASNAVGTLTNLANNNPLPGALSNAVGTLQNAATNNPLSGVASN AVGTLTNLANNNPLPGALSNAV degenerate repeat sequence.
  
     0.418
BPSS0090
Putative exported protein; Low similarity to Yersinia pestis putative exported protein ypo1208 SWALL:Q8ZGS3 (EMBL:AJ414147) (175 aa) fasta scores: E(): 3.4e-08, 27.71% id in 166 aa, and to Salmonella typhimurium putative inner membrane protein YfaZ or stm2294 SWALL:Q8ZNF6 (EMBL:AE008803) (215 aa) fasta scores: E(): 8.4e-07, 29.56% id in 159 aa.
       0.418
Your Current Organism:
Burkholderia pseudomallei
NCBI taxonomy Id: 272560
Other names: B. pseudomallei K96243, Burkholderia pseudomallei K96243, Burkholderia pseudomallei str. K96243, Burkholderia pseudomallei strain K96243
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