STRINGSTRING
BPSS0095 BPSS0095 BPSS0102 BPSS0102 BPSL3111 BPSL3111 BPSS0168 BPSS0168 BPSS0531 BPSS0531 BPSS1510 BPSS1510 BPSS2105 BPSS2105 BPSS0096 BPSS0096 BPSS0098 BPSS0098 BPSS0094 BPSS0094 BPSS0097 BPSS0097
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BPSS0095Similar to Yersinia pestis putative membrane protein ypo1468 or ypo0975 or y2703 or y3366 SWALL:Q8XF18 (EMBL:AJ414148) (228 aa) fasta scores: E(): 8.8e-07, 27.67% id in 206 aa. (218 aa)    
Predicted Functional Partners:
BPSS0102
Similar to Salmonella typhi putative membrane protein sty0305 SWALL:Q8Z965 (EMBL:AL627266) (433 aa) fasta scores: E(): 1.8e-76, 55.78% id in 380 aa, and to Yersinia pestis putative OmpA-family membrane protein ypo0514 SWALL:Q8ZII3 (EMBL:AJ414143) (536 aa) fasta scores: E(): 3.2e-24, 30.93% id in 375 aa. Note: The N-terminal region of this CDS does not present similarities to any of the database matches. Also similar to BPSS0168 (422 aa) fasta scores: E(): 1.9e-61, 46.283% identity in 417 aa overlap.
    
  0.914
BPSL3111
Putative membrane protein; Similar to Ralstonia solanacearum probable transmembrane protein Rsp0739 or Rs01969 SWALL:Q8XRU2 (EMBL:AL646080) (263 aa) fasta scores: E(): 2.7e-70, 64.98% id in 257 aa.
     
  0.900
BPSS0168
OmpA family membrane protein; Similar to Salmonella typhimurium, and Salmonella enterica subsp. enterica serovar Typhimurium putative outer membrane protein, OmpA family stm0282 or SciP SWALL:Q93IS0 (EMBL:AE008707) (434 aa) fasta scores: E(): 6.7e-63, 48.33% id in 391 aa, and to Pseudomonas aeruginosa hypothetical protein pa0078 SWALL:Q9I754 (EMBL:AE004447) (449 aa) fasta scores: E(): 1.3e-22, 37.44% id in 414 aa. Note: Also similar to BPSS0102 (434 aa) fasta scores: E(): 2.1e-55, 46.283% identity in 417 aa overlap.
     
  0.900
BPSS0531
Similar to Yersinia pestis putative OmpA-family membrane protein ypo0514 SWALL:Q8ZII3 (EMBL:AJ414143) (536 aa) fasta scores: E(): 5.4e-45, 36.23% id in 505 aa. Internal region is weakly similar to Salmonella typhi putative membrane protein sty0305 SWALL:Q8Z965 (EMBL:AL627266) (433 aa) fasta scores: E(): 3.5e-13, 28.31% id in 445 aa. CDS is extended at the C-terminus in comparison to similar proteins.
     
  0.900
BPSS1510
Putative membrane protein; Similar over its N-terminal region to Ralstonia solanacearum probable transmembrane protein rsp0739 or rs01969 SWALL:Q8XRU2 (EMBL:AL646080) (263 aa) fasta scores: E(): 1.3e-06, 34.83% id in 155 aa, and to Yersinia pestis putative membrane protein ypo1468 or ypo0975 or y2703 or y3366 SWALL:Q8XF18 (EMBL:AJ414148) (228 aa) fasta scores: E(): 0.047, 28.94% id in 190 aa.
     
  0.900
BPSS2105
Putative outer membrane porin protein; Similar to Rhizobium leguminosarum ImpK SWALL:Q93EC3 (EMBL:AF361470) (510 aa) fasta scores: E(): 5.2e-19, 33.03% id in 451 aa, and to Pseudomonas aeruginosa hypothetical protein Pa0078 SWALL:Q9I754 (EMBL:AE004447) (449 aa) fasta scores: E(): 5.4e-63, 47.12% id in 452 aa, and to Xanthomonas axonopodis hypothetical protein Xac4120 SWALL:Q8PF65 (EMBL:AE012061) (451 aa) fasta scores: E(): 1.2e-45, 40.29% id in 412 aa.
     
  0.900
BPSS0096
Similar to Yersinia pestis putative membrane protein ypo2953 or y1530 SWALL:Q8ZCM8 (EMBL:AJ414154) (560 aa) fasta scores: E(): 8.4e-25, 23.54% id in 565 aa, and to Yersinia pestis putative OmpA-family membrane protein ypo0974 or y2702 or y3365 SWALL:Q8ZHC6 (EMBL:AJ414145) (578 aa) fasta scores: E(): 7.2e-19, 28.17% id in 575 aa.
     
 0.774
BPSS0098
Similar to Yersinia pestis hypothetical protein ypo2938 SWALL:Q8ZCP0 (EMBL:AJ414154) (500 aa) fasta scores: E(): 1.3e-175, 84.6% id in 500 aa, and to Salmonella enterica subsp. enterica serovar Typhimurium SciI protein SWALL:Q93IS7 (EMBL:AJ320483) (497 aa) fasta scores: E(): 9.3e-171, 83.36% id in 499 aa. Note: Also similar to BPSS0172 (500 aa) fasta scores: E(): 1.5e-182, 84.168% identity in 499 aa overlap.
  
  
 0.597
BPSS0094
Similar to Xylella fastidiosa fimbrial subunit precursor xf0083 SWALL:Q9PH63 (EMBL:AE003862) (184 aa) fasta scores: E(): 9.2e-12, 37.5% id in 176 aa, and to Escherichia coli F17 fimbrial protein precursor F17a-A SWALL:FMF3_ECOLI (SWALL:P11312) (180 aa) fasta scores: E(): 4.4e-10, 38.46% id in 169 aa.
       0.591
BPSS0097
Similar to Yersinia pestis hypothetical protein ypo2939 SWALL:Q8ZCN9 (EMBL:AJ414154) (174 aa) fasta scores: E(): 2.4e-48, 84.75% id in 164 aa, and to Salmonella typhi hypothetical protein sty0297 SWALL:Q8Z970 (EMBL:AL627266) (180 aa) fasta scores: E(): 6.7e-48, 76.66% id in 180 aa. Note: Also similar to BPSS0173 (194 aa) fasta scores: E(): 2e-48, 81.818% identity in 165 aa overlap.
  
  
 0.588
Your Current Organism:
Burkholderia pseudomallei
NCBI taxonomy Id: 272560
Other names: B. pseudomallei K96243, Burkholderia pseudomallei K96243, Burkholderia pseudomallei str. K96243, Burkholderia pseudomallei strain K96243
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