STRINGSTRING
BPSS0096 BPSS0096 BPSL1659 BPSL1659 BPSS0095 BPSS0095 BPSS0909 BPSS0909 tolB tolB omlA omlA BPSS0094 BPSS0094 BPSS0093 BPSS0093 BPSS0102 BPSS0102 BPSL2150 BPSL2150 BPSS0083 BPSS0083
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BPSS0096Similar to Yersinia pestis putative membrane protein ypo2953 or y1530 SWALL:Q8ZCM8 (EMBL:AJ414154) (560 aa) fasta scores: E(): 8.4e-25, 23.54% id in 565 aa, and to Yersinia pestis putative OmpA-family membrane protein ypo0974 or y2702 or y3365 SWALL:Q8ZHC6 (EMBL:AJ414145) (578 aa) fasta scores: E(): 7.2e-19, 28.17% id in 575 aa. (558 aa)    
Predicted Functional Partners:
BPSL1659
Putative exported protein; C-terminal region similar to C-terminal region of Escherichia coli, and Escherichia coli O157:H7 outer membrane protein A precursor OmpA or TolG or Tut or Con or b0957 or z1307 or ecs1041 SWALL:OMPA_ECOLI (SWALL:P02934) (346 aa) fasta scores: E(): 2.1e-12, 38.36% id in 159 aa. N-terminal region has low similarities to exported proteins/lipoproteins.
  
   
 0.861
BPSS0095
Similar to Yersinia pestis putative membrane protein ypo1468 or ypo0975 or y2703 or y3366 SWALL:Q8XF18 (EMBL:AJ414148) (228 aa) fasta scores: E(): 8.8e-07, 27.67% id in 206 aa.
     
 0.774
BPSS0909
OmpA family protein; C-terminus is similar to the C-terminal region of Escherichia coli outer membrane protein A precursor OmpA or TolG or Tut or Con SWALL:OMPA_ECOLI (SWALL:P02934) (346 aa) fasta scores: E(): 9.7e-16, 41.5% id in 159 aa. Full length CDS is similar to Haemophilus somnus antigen SWALL:Q48292 (EMBL:L07795) (273 aa) fasta scores: E(): 2e-10, 32.49% id in 277 aa.
  
     0.705
tolB
Putative periplasmic TolB protein; Part of the Tol-Pal system, which plays a role in outer membrane invagination during cell division and is important for maintaining outer membrane integrity.
  
 
 0.668
omlA
Putative outer membrane protein; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane.
   
  
 0.606
BPSS0094
Similar to Xylella fastidiosa fimbrial subunit precursor xf0083 SWALL:Q9PH63 (EMBL:AE003862) (184 aa) fasta scores: E(): 9.2e-12, 37.5% id in 176 aa, and to Escherichia coli F17 fimbrial protein precursor F17a-A SWALL:FMF3_ECOLI (SWALL:P11312) (180 aa) fasta scores: E(): 4.4e-10, 38.46% id in 169 aa.
  
    0.583
BPSS0093
Similar to Escherichia coli outer membrane usher protein precursor AfaC SWALL:AFAC_ECOLI (SWALL:P53517) (859 aa) fasta scores: E(): 8.4e-77, 33.4% id in 877 aa.
       0.581
BPSS0102
Similar to Salmonella typhi putative membrane protein sty0305 SWALL:Q8Z965 (EMBL:AL627266) (433 aa) fasta scores: E(): 1.8e-76, 55.78% id in 380 aa, and to Yersinia pestis putative OmpA-family membrane protein ypo0514 SWALL:Q8ZII3 (EMBL:AJ414143) (536 aa) fasta scores: E(): 3.2e-24, 30.93% id in 375 aa. Note: The N-terminal region of this CDS does not present similarities to any of the database matches. Also similar to BPSS0168 (422 aa) fasta scores: E(): 1.9e-61, 46.283% identity in 417 aa overlap.
 
 
0.491
BPSL2150
Putative outer membrane protein; Similar to Ralstonia solanacearum probable transmembrane protein rsc1413 or rs05279 SWALL:Q8XZI2 (EMBL:AL646064) (184 aa) fasta scores: E(): 6.5e-32, 71.25% id in 160 aa, and to Escherichia coli, Escherichia coli O6, and Escherichia coli O157:H7 histone-like protein HLP-1 precursor HlpA or Skp or OmpH or b0178 or c0215 or z0190 or ecs0180 SWALL:HLPA_ECOLI (SWALL:P11457) (161 aa) fasta scores: E(): 1.3e-05, 35.44% id in 158 aa; Belongs to the skp family.
  
 
 0.431
BPSS0083
Putative exported protein; No significant database matches.
  
 
 0.424
Your Current Organism:
Burkholderia pseudomallei
NCBI taxonomy Id: 272560
Other names: B. pseudomallei K96243, Burkholderia pseudomallei K96243, Burkholderia pseudomallei str. K96243, Burkholderia pseudomallei strain K96243
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