STRINGSTRING
BPSS0104 BPSS0104 BPSS0105 BPSS0105 BPSS0103 BPSS0103 BPSS0100 BPSS0100 BPSS0101 BPSS0101 BPSS0102 BPSS0102
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BPSS0104Hypothetical protein; No significant database matches. (189 aa)    
Predicted Functional Partners:
BPSS0105
Conserved hypothetical protein; Similar in almost its full length to Yersinia pestis hypothetical protein ypo2725 SWALL:Q8ZD67 (EMBL:AJ414153) (921 aa) fasta scores: E(): 8e-76, 45.87% id in 896 aa, C-terminal region to Shigella flexneri Rhs-family protein sf0265 SWALL:AAN41925 (EMBL:AE015061) (737 aa) fasta scores: E(): 7.7e-48, 41.75% id in 697 aa, and C-terminal region where the highly repetitive fragment is to Thermoproteus tenax virus 1 viral protein Tpx SWALL:VTP3_TTV1V (SWALL:P19275) (474 aa) fasta scores: E(): 1.6e-32, 59.53% id in 304 aa. Note: Contains a highly repetitive reg [...]
       0.581
BPSS0103
Putative membrane protein; Similar to Salmonella enterica subsp. enterica serovar Typhimurium SciS protein precursor SWALL:Q93IR7 (EMBL:AJ320483) (1289 aa) fasta scores: E(): 8.3e-165, 45.82% id in 1305 aa, and to Yersinia pestis putative membrane protein ypo2724 SWALL:Q8ZD68 (EMBL:AJ414153) (1275 aa) fasta scores: E(): 2.4e-94, 34.01% id in 1317 aa. Note: Also similar to BPSS0167 (1359 aa) fasta scores: E(): 3.2e-101, 47.210% identity in 1362 aa overlap.
       0.449
BPSS0100
Putative exported protein; Similar to Salmonella enterica subsp. enterica serovar Typhimurium SciN protein precursor SciN SWALL:Q93IS2 (EMBL:AJ320483) (163 aa) fasta scores: E(): 5.3e-21, 39.21% id in 153 aa, and to Pseudomonas aeruginosa hypothetical protein pa0080 SWALL:Q9I752 (EMBL:AE004447) (154 aa) fasta scores: E(): 1.4e-12, 35.24% id in 122 aa. Note: Also similar to BPSS0170 (171 aa) fasta scores: E(): 5.8e-24, 45.860% identity in 157 aa overlap.
       0.431
BPSS0101
Similar to Yersinia pestis hypothetical protein ypo2934 or y1549 SWALL:Q8ZCP3 (EMBL:AJ414154) (449 aa) fasta scores: E(): 3.1e-111, 62.61% id in 444 aa, and to Salmonella typhi hypothetical protein sty0304 SWALL:Q8Z966 (EMBL:AL627266) (447 aa) fasta scores: E(): 2.7e-97, 57.9% id in 449 aa. Note: Also similar to BPSS0169 (449 aa) fasta scores: E(): 1.1e-108, 62.054% identity in 448 aa overlap.
       0.431
BPSS0102
Similar to Salmonella typhi putative membrane protein sty0305 SWALL:Q8Z965 (EMBL:AL627266) (433 aa) fasta scores: E(): 1.8e-76, 55.78% id in 380 aa, and to Yersinia pestis putative OmpA-family membrane protein ypo0514 SWALL:Q8ZII3 (EMBL:AJ414143) (536 aa) fasta scores: E(): 3.2e-24, 30.93% id in 375 aa. Note: The N-terminal region of this CDS does not present similarities to any of the database matches. Also similar to BPSS0168 (422 aa) fasta scores: E(): 1.9e-61, 46.283% identity in 417 aa overlap.
       0.431
Your Current Organism:
Burkholderia pseudomallei
NCBI taxonomy Id: 272560
Other names: B. pseudomallei K96243, Burkholderia pseudomallei K96243, Burkholderia pseudomallei str. K96243, Burkholderia pseudomallei strain K96243
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