STRINGSTRING
BPSS0109 BPSS0109 BPSS0108 BPSS0108 BPSS0110 BPSS0110 BPSS0111 BPSS0111 BPSS0112 BPSS0112 BPSS0113 BPSS0113 BPSS0114 BPSS0114 BPSS0115 BPSS0115
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
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Gene Fusion
Cooccurrence
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Experiments
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[Homology]
Score
BPSS0109Putative exported protein; Similar to Yersinia pestis putative fimbrial protein ypo2950 or y1533 SWALL:Q8ZCN1 (EMBL:AJ414154) (343 aa) fasta scores: E(): 0.00019, 23.52% id in 357 aa, and C-terminal region to Salmonella typhimurium fimbrial-like protein precursor FimF or stm0548 SWALL:FIMF_SALTY (SWALL:P37926) (172 aa) fasta scores: E(): 0.41, 27.38% id in 168 aa. (342 aa)    
Predicted Functional Partners:
BPSS0108
Putative Rhs-like protein (pseudogene); PS00017 ATP/GTP-binding site motif A (P-loop).
       0.673
BPSS0110
Conserved hypothetical protein; Similar to Salmonella typhimurium, and Salmonella enterica subsp. enterica serovar Typhimurium putative cytoplasmic protein stm0266 or SciA SWALL:Q93IT5 (EMBL:AE008707) (351 aa) fasta scores: E(): 9.6e-42, 43.42% id in 350 aa, and to Yersinia pestis hypothetical protein ypo2949 SWALL:Q8ZCN2 (EMBL:AJ414154) (393 aa) fasta scores: E(): 1.1e-31, 38.03% id in 376 aa. Note: Also similar to BPSS0180 (382 aa) fasta scores: E(): 3.7e-28, 44.101% identity in 356 aa overlap.
       0.608
BPSS0111
Similar to Yersinia pestis hypothetical protein ypo2948 SWALL:Q8ZCN3 (EMBL:AJ414154) (341 aa) fasta scores: E(): 5.7e-72, 52.1% id in 332 aa, and to Salmonella enterica subsp. enterica serovar Typhimurium SciB protein SWALL:Q93IT4 (EMBL:AJ320483) (291 aa) fasta scores: E(): 9.5e-68, 57.54% id in 285 aa. Note: Also similar to BPSS0179 (363 aa) fasta scores: E(): 2.8e-68, 55.224% identity in 335 aa overlap.
       0.574
BPSS0112
Similar to Yersinia pestis hypothetical protein ypo2947 or y1537 SWALL:Q8ZCN4 (EMBL:AJ414154) (626 aa) fasta scores: E(): 3.3e-177, 64.05% id in 626 aa, and to Salmonella enterica subsp. enterica serovar Typhimurium SciC protein SWALL:Q93IT3 (EMBL:AJ320483) (627 aa) fasta scores: E(): 8.1e-163, 60.92% id in 627 aa. Note: Also similar to BPSS0178 (630 aa) fasta scores: E(): 1.5e-156, 63.796% identity in 627 aa overlap.
       0.574
BPSS0113
Conserved hypothetical protein; Similar to Salmonella typhimurium, and Salmonella enterica subsp. enterica serovar Typhimurium putative cytoplasmic protein stm0269 or SciD SWALL:Q93IT2 (EMBL:AE008707) (164 aa) fasta scores: E(): 1.2e-21, 43.79% id in 153 aa, and to Yersinia pestis hypothetical protein ypo2728 or y1561 SWALL:Q8ZD64 (EMBL:AJ414153) (159 aa) fasta scores: E(): 3.1e-20, 40.12% id in 157 aa. Note: Also similar to BPSS0177 (194 aa) fasta scores: E(): 1.6e-24, 45.912% identity in 159 aa overlap.
       0.574
BPSS0114
Conserved hypothetical protein; Similar to Salmonella enterica subsp. enterica serovar Typhimurium SciE protein SWALL:Q93IT1 (EMBL:AJ320483) (279 aa) fasta scores: E(): 5.9e-38, 39.85% id in 276 aa, and to Yersinia pestis hypothetical protein ypo2727 or y1560 SWALL:Q8ZD65 (EMBL:AJ414153) (268 aa) fasta scores: E(): 8.6e-36, 39.36% id in 254 aa. Note: Also similar to BPSS0176 (322 aa) fasta scores: E(): 4.8e-29, 39.590% identity in 293 aa overlap.
       0.574
BPSS0115
Hypothetical protein; No significant database matches.
       0.574
Your Current Organism:
Burkholderia pseudomallei
NCBI taxonomy Id: 272560
Other names: B. pseudomallei K96243, Burkholderia pseudomallei K96243, Burkholderia pseudomallei str. K96243, Burkholderia pseudomallei strain K96243
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