STRINGSTRING
BPSS0158 BPSS0158 BPSS1827 BPSS1827 BPSS2351 BPSS2351 BPSS1685 BPSS1685 BPSS2110 BPSS2110 BPSL2196 BPSL2196 BPSS1829 BPSS1829 BPSS1826 BPSS1826 BPSL0698 BPSL0698 BPSS1828 BPSS1828 BPSS2136 BPSS2136
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BPSS0158Putative exported protein; Very low similarity to Anabaena sp. hypothetical protein all2038 SWALL:Q8YVE0 (EMBL:AP003588) (743 aa) fasta scores: E(): 1.3e-16, 30.72% id in 677 aa, and in its C-terminal region to Anabaena sp. hypothetical protein all3696 SWALL:Q8YQW5 (EMBL:AP003594) (379 aa) fasta scores: E(): 2.1e-06, 27.71% id in 368 aa. (638 aa)    
Predicted Functional Partners:
BPSS1827
Putative membrane protein; Similar to Anabaena sp. hypothetical protein alr2841 SWALL:Q8YT85 (EMBL:AP003591) (474 aa) fasta scores: E(): 1.5e-53, 32.74% id in 455 aa.
  
     0.774
BPSS2351
Similar to Paracoccus versutus replication protein Rep SWALL:Q8VS80 (EMBL:AF390867) (419 aa) fasta scores: E(): 1e-08, 26.81% id in 440 aa. C-terminal region is weakly similar to Coxiella burnetii hypothetical protein SWALL:Q9S6J8 (EMBL:AF131076) (433 aa) fasta scores: E(): 7.6e-08, 21.42% id in 448 aa.
  
     0.771
BPSS1685
Putative lipopolysaccharide biosynthesis related membrane protein; Similar to Shigella flexneri putative O-antigen transporter RfbE or sf2100 SWALL:RFBE_SHIFL (SWALL:P37781) (418 aa) fasta scores: E(): 1.5e-24, 26.17% id in 424 aa, and to Salmonella typhi putative O-antigen transporter RfbX or sty2297 SWALL:RFBX_SALTI (SWALL:Q99191) (432 aa) fasta scores: E(): 2.6e-05, 21.56% id in 422 aa.
  
     0.768
BPSS2110
Putative exported protein; Similar to Xylella fastidiosa hypothetical protein Xf1451 SWALL:Q9PDC8 (EMBL:AE003975) (636 aa) fasta scores: E(): 1.5e-39, 28.15% id in 618 aa, and to Xanthomonas axonopodis hypothetical protein Xac2007 SWALL:AAM36869 (EMBL:AE011836) (642 aa) fasta scores: E(): 4.2e-38, 27.45% id in 641 aa, and to Xanthomonas campestris hypothetical protein Xcc1973 SWALL:AAM41262 (EMBL:AE012301) (642 aa) fasta scores: E(): 1.5e-36, 27.07% id in 628 aa.
  
     0.760
BPSL2196
Low similarity to Vibrio cholerae acetyltransferase, putative vca0402 SWALL:Q9KMF8 (EMBL:AE004375) (172 aa) fasta scores: E(): 8.1e-12, 39.31% id in 117 aa.
  
 
   0.758
BPSS1829
Similar to Anabaena sp. glycosyltransferase alr2840 SWALL:Q8YT86 (EMBL:AP003591) (315 aa) fasta scores: E(): 3.2e-53, 48.84% id in 303 aa, and to Archaeoglobus fulgidus succinoglycan biosynthesis protein af0620 SWALL:O29635 (EMBL:AE001062) (297 aa) fasta scores: E(): 1.9e-08, 30.73% id in 231 aa.
  
     0.753
BPSS1826
Similar to Anabaena sp. glycosyltransferase alr2839 SWALL:Q8YT87 (EMBL:AP003591) (381 aa) fasta scores: E(): 3.1e-62, 47.25% id in 383 aa, and to Methanobacterium thermoautotrophicum LPS biosynthesis related protein mth450 SWALL:O26550 (EMBL:AE000829) (411 aa) fasta scores: E(): 2.7e-13, 27.87% id in 330 aa.
  
    0.749
BPSL0698
Putative transmembrane transporter protein; Similar to Pseudomonas syringae copper resistance protein D copD SWALL:COPD_PSESF (SWALL:Q9KWM8) (311 aa) fasta scores: E(): 1.7e-06, 30.41% id in 263 aa, and to Ralstonia solanacearum probable copper resistance D transmembrane protein copD or rsp0659 or rs01790 SWALL:Q8XS22 (EMBL:AL646080) (309 aa) fasta scores: E(): 4.6e-08, 31.69% id in 306 aa, and to Xanthomonas campestris juglandis copper-resistance genes SWALL:Q56798 (EMBL:L19222) (307 aa) fasta scores: E(): 1.2e-06, 28.62% id in 283 aa.
  
     0.745
BPSS1828
Putative glycosyltransferase group 1 protein; No significant database matches.
  
    0.741
BPSS2136
Family S43 non-peptidase homologue; Similar to Pseudomonas aeruginosa porin D precursor OprD or pa0958 SWALL:PORD_PSEAE (SWALL:P32722) (443 aa) fasta scores: E(): 2.2e-32, 35.58% id in 444 aa, and to Pseudomonas aeruginosa probable porin pa4501 SWALL:Q9HVS0 (EMBL:AE004864) (484 aa) fasta scores: E(): 2.8e-43, 33.66% id in 505 aa.
  
     0.734
Your Current Organism:
Burkholderia pseudomallei
NCBI taxonomy Id: 272560
Other names: B. pseudomallei K96243, Burkholderia pseudomallei K96243, Burkholderia pseudomallei str. K96243, Burkholderia pseudomallei strain K96243
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