STRINGSTRING
BPSS0213 BPSS0213 BPSS0493 BPSS0493 BPSS1992 BPSS1992 BPSS0212 BPSS0212 BPSL1763 BPSL1763 BPSS0214 BPSS0214 BPSS0211 BPSS0211
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BPSS0213Similar to Ralstonia solanacearum hypothetical protein rsc1727 or rs02915 SWALL:Q8XYN1 (EMBL:AL646066) (193 aa) fasta scores: E(): 2.1e-33, 51.79% id in 195 aa, and to Ralstonia solanacearum hypothetical protein rsc1726 or rs02914 SWALL:Q8XYN2 (EMBL:AL646066) (208 aa) fasta scores: E(): 1.3e-12, 36.94% id in 203 aa. (196 aa)    
Predicted Functional Partners:
BPSS0493
Putative chitin-binding protein; Similar to the N-terminal region of Yersinia pestis putative carbohydrate-binding protein ypo3227 SWALL:Q8ZC03 (EMBL:AJ414156) (534 aa) fasta scores: E(): 9.8e-68, 52.97% id in 353 aa, and of Alteromonas sp. chitin-binding protein 1 precursor Cbp1 SWALL:Q8VLQ2 (EMBL:AB063629) (475 aa) fasta scores: E(): 1.2e-28, 38.04% id in 347 aa.
      
 0.686
BPSS1992
Family S15 non-peptidase homologue; Similar to Lactobacillus helveticus PepX SWALL:Q59485 (EMBL:U22900) (793 aa) fasta scores: E(): 6.2e-23, 28.68% id in 624 aa, and to Lactobacillus delbrueckii Xaa-Pro dipeptidyl-peptidase PepX SWALL:PEPX_LACDL (SWALL:P40334) (792 aa) fasta scores: E(): 4.7e-22, 27.5% id in 629 aa. Note: This CDS does not present any similarity from residue 61 to any of the database matches.
      
 0.686
BPSS0212
Similar to Ralstonia solanacearum hypothetical protein rsc1726 or rs02914 SWALL:Q8XYN2 (EMBL:AL646066) (208 aa) fasta scores: E(): 6.3e-40, 54.71% id in 212 aa, and to Ralstonia solanacearum hypothetical protein rsc1727 or rs02915 SWALL:Q8XYN1 (EMBL:AL646066) (193 aa) fasta scores: E(): 3.2e-13, 39.61% id in 207 aa.
      
0.610
BPSL1763
Putative exported chitinase; Similar to Aeromonas sp chitinase II precursor SWALL:Q59145 (EMBL:D31818) (542 aa) fasta scores: E(): 1.7e-30, 34.61% id in 468 aa, and to the C-terminal region of Escherichia coli probable bifunctional chitinase/lysozyme precursor ChiA or b3338 SWALL:CHIA_ECOLI (SWALL:P13656) (897 aa) fasta scores: E(): 9.3e-30, 40.25% id in 318 aa. Note: In the C-terminal region of the E. coli entry is where the chitinase activity resides.
      
 0.578
BPSS0214
Putative heme/metallo cofactor biosynthesis related protein; Similar to Ralstonia solanacearum hypothetical protein rsc1728 or rs02916 SWALL:Q8XYN0 (EMBL:AL646066) (491 aa) fasta scores: E(): 3.8e-168, 84.45% id in 489 aa, and to Pyrobaculum aerophilum metallo cofactor biosynthesis protein pae0579 SWALL:Q8ZYW8 (EMBL:AE009774) (384 aa) fasta scores: E(): 1.7e-19, 28.45% id in 369 aa.
       0.556
BPSS0211
Similar to Ralstonia solanacearum hypothetical protein rsc1725 or rs02913 SWALL:Q8XYN3 (EMBL:AL646066) (63 aa) fasta scores: E(): 2.2e-08, 62.26% id in 53 aa, and to the C-terminal region of Ralstonia solanacearum hypothetical protein rsc1727 or rs02915 SWALL:Q8XYN1 (EMBL:AL646066) (193 aa) fasta scores: E(): 0.00076, 45.9% id in 61 aa.
       0.431
Your Current Organism:
Burkholderia pseudomallei
NCBI taxonomy Id: 272560
Other names: B. pseudomallei K96243, Burkholderia pseudomallei K96243, Burkholderia pseudomallei str. K96243, Burkholderia pseudomallei strain K96243
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