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gabT gabT gabD-2 gabD-2 BPSS1466 BPSS1466 BPSL1020 BPSL1020 gabD gabD BPSL2650 BPSL2650 BPSS0742 BPSS0742 BPSL1550 BPSL1550 msdA msdA mmsA mmsA BPSS0743 BPSS0743
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
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Experiments
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[Homology]
Score
gabTSimilar to Escherichia coli 4-aminobutyrate aminotransferase GabT or b2662 SWALL:GABT_ECOLI (SWALL:P22256) (426 aa) fasta scores: E(): 4.8e-79, 54.24% id in 424 aa, and to Ralstonia solanacearum probable 4-aminobutyrate aminotransferase protein rsc0029 or rs01852 SWALL:Q8Y3F1 (EMBL:AL646057) (426 aa) fasta scores: E(): 1.5e-108, 71.29% id in 418 aa; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. (427 aa)    
Predicted Functional Partners:
gabD-2
Similar to Escherichia coli succinate-semialdehyde dehydrogenase [NADP+] GabD or b2661 SWALL:GABD_ECOLI (SWALL:P25526) (482 aa) fasta scores: E(): 1.4e-130, 69.7% id in 482 aa, and to Salmonella typhi succinate-semialdehyde dehydrogenase sty2911 SWALL:Q8Z4F8 (EMBL:AL627276) (482 aa) fasta scores: E(): 7.2e-131, 70.12% id in 482 aa.
 
 0.967
BPSS1466
Putative aldehyde dehydrogenase family protein; Similar to Streptomyces clavuligerus semialdehyde dehydrogenase Pcd SWALL:O85725 (EMBL:AF073895) (512 aa) fasta scores: E(): 2e-120, 66.05% id in 492 aa, and to Ralstonia solanacearum putative transmembrane aldehyde dehydrogenase oxidoreductase protein rsp1591 or rs02148 SWALL:Q8XPP7 (EMBL:AL646085) (504 aa) fasta scores: E(): 9.4e-134, 69.84% id in 504 aa, and to Rhizobium loti aldehyde dehydrogenase mll2867 SWALL:Q98HH4 (EMBL:AP003000) (504 aa) fasta scores: E(): 4.1e-132, 68.93% id in 499 aa.
  
 0.950
BPSL1020
Similar to Escherichia coli putative aldehyde dehydrogenase AldH or b1300 SWALL:DHAL_ECOLI (SWALL:P23883) (495 aa) fasta scores: E(): 2.3e-61, 41.12% id in 479 aa, and to Ralstonia solanacearum probable aldehyde dehydrogenase oxidoreductase protein rsc2350 or rs01196 SWALL:Q8XWX0 (EMBL:AL646069) (478 aa) fasta scores: E(): 5.1e-138, 73.31% id in 476 aa.
 
 0.948
gabD
Similar to Escherichia coli succinate-semialdehyde dehydrogenase [NADP+] GabD or b2661 SWALL:GABD_ECOLI (SWALL:P25526) (482 aa) fasta scores: E(): 2e-126, 66.45% id in 480 aa, and to Pseudomonas aeruginosa succinate-semialdehyde dehydrogenase pa0265 SWALL:Q9I6M5 (EMBL:AE004464) (483 aa) fasta scores: E(): 1e-130, 69.03% id in 478 aa.
 
 0.922
BPSL2650
Putative aminotransferase; Similar to Ralstonia solanacearum probable beta-alanine--pyruvate aminotransferase rsp1056 or rs02393 SWALL:Q8XR12 (EMBL:AL646082) (445 aa) fasta scores: E(): 1.6e-122, 73.51% id in 438 aa, and to Rhizobium meliloti putative omega-amino acid--pyruvate aminotransferase protein r02404 or smc01534 SWALL:Q92N34 (EMBL:AL591790) (442 aa) fasta scores: E(): 8.2e-109, 64.31% id in 440 aa; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
 
 
 
0.919
BPSS0742
Beta-alanine--pyruvate transaminase; Similar to Pseudomonas putida omega-amino acid--pyruvate aminotransferase SWALL:OAPT_PSEPU (SWALL:P28269) (449 aa) fasta scores: E(): 1.1e-104, 60.37% id in 429 aa, and to Pseudomonas aeruginosa beta-alanine--pyruvate transaminase pa0132 SWALL:Q9I700 (EMBL:AE004451) (448 aa) fasta scores: E(): 3.2e-109, 60.71% id in 448 aa. Simlar to BPSL2650, 52.116% identity (52.941% ungapped) in 449 aa overlap; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
 
 
 
0.918
BPSL1550
Similar to Bacillus subtilis betaine aldehyde dehydrogenase GbsA SWALL:DHAB_BACSU (SWALL:P71016) (490 aa) fasta scores: E(): 1.9e-59, 40.33% id in 476 aa, and to Ralstonia solanacearum putative betaine aldehyde dehydrogenase rsc1456 or rs03851 SWALL:Q8XZE5 (EMBL:AL646064) (478 aa) fasta scores: E(): 1.1e-127, 71.3% id in 474 aa.
 
 0.917
msdA
Similar to Streptomyces coelicolor methylmalonic acid semialdehyde dehydrogenase MsdA SWALL:Q53935 (EMBL:L48550) (500 aa) fasta scores: E(): 5.7e-112, 60.28% id in 491 aa.
  
 0.917
mmsA
Similar to Pseudomonas aeruginosa methylmalonate-semialdehyde dehydrogenase [acylating] MmsA SWALL:MMSA_PSEAE (SWALL:P28810) (496 aa) fasta scores: E(): 6.6e-114, 58.46% id in 496 aa, and to Ralstonia solanacearum probable methylmalonate-semialdehyde dehydrogenase oxidoreductase protein rsp0650 or rs05572 SWALL:Q8XS31 (EMBL:AL646080) (515 aa) fasta scores: E(): 3.2e-161, 80.86% id in 507 aa.
  
 0.917
BPSS0743
Similar to Pseudomonas aeruginosa methylmalonate-semialdehyde dehydrogenase [acylating] MmsA SWALL:MMSA_PSEAE (SWALL:P28810) (496 aa) fasta scores: E(): 2.9e-89, 47.56% id in 492 aa, and to Pseudomonas aeruginosa probable aldehyde dehydrogenase pa0130 SWALL:Q9I702 (EMBL:AE004451) (497 aa) fasta scores: E(): 3.6e-129, 66.53% id in 493 aa. Similar to BPSL3420, 57.730% identity (58.300% ungapped) in 511 aa overlap.
  
 0.917
Your Current Organism:
Burkholderia pseudomallei
NCBI taxonomy Id: 272560
Other names: B. pseudomallei K96243, Burkholderia pseudomallei K96243, Burkholderia pseudomallei str. K96243, Burkholderia pseudomallei strain K96243
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