STRINGSTRING
BPSS0481 BPSS0481 BPSS1885 BPSS1885 BPSS1887 BPSS1887 BPSS1888 BPSS1888 BPSS1886 BPSS1886 BPSS0486 BPSS0486 BPSL2229 BPSL2229 BPSS1269 BPSS1269 BPSS1008 BPSS1008 BPSL1424 BPSL1424 BPSS0487 BPSS0487
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BPSS0481Putative CoA ligase; Similar to Azoarcus evansii 2-aminobenzoate-CoA ligase SWALL:Q93FC0 (EMBL:AF320253) (542 aa) fasta scores: E(): 2.6e-119, 57.35% id in 537 aa, and to Bacillus subtilis long-chain-fatty-acid--CoA ligase LcfA SWALL:LCFA_BACSU (SWALL:P94547) (560 aa) fasta scores: E(): 1.9e-31, 29.07% id in 564 aa. (541 aa)    
Predicted Functional Partners:
BPSS1885
Putative aromatic hydrocarbons catabolism-related reductase; Similar to Rhodococcus erythropolis rhodocoxin reductase ThcD SWALL:THCD_RHOER (SWALL:P43494) (426 aa) fasta scores: E(): 1.7e-39, 37.1% id in 407 aa, and to Escherichia coli 3-phenylpropionate dioxygenase ferredoxin--NAD(+) reductase component (EC 1.18.1.3) HcaD or PhdA or HcaA4 or b2542 SWALL:HCAD_ECOLI (SWALL:P77650) (400 aa) fasta scores: E(): 4.7e-38, 37.83% id in 407 aa.
  
 
  0.902
BPSS1887
Putative aromatic oxygenase; Similar to Sphingomonas aromaticivorans small subunit aromatic oxygenase BphA2D SWALL:O85985 (EMBL:AF079317) (162 aa) fasta scores: E(): 7.8e-27, 50.36% id in 137 aa, and to Pseudomonas aeruginosa ortho-halobenzoate 1,2-dioxygenase beta-isp protein OhbA SWALL:Q9Z5W2 (EMBL:AF121970) (176 aa) fasta scores: E(): 8.4e-27, 48.36% id in 153 aa. Note: The N-terminal region of this CDS does not present similarities with the database matches hit by the rest of the CDS.
     
 0.901
BPSS1888
Putative aromatic oxygenase; Similar to Sphingomonas aromaticivorans large subunit aromatic oxygenase BphA1C SWALL:O85993 (EMBL:AF079317) (420 aa) fasta scores: E(): 5e-83, 49.88% id in 419 aa, and to Pseudomonas aeruginosa O-halobenzoate 1,2-dioxygenase large subunit OhbA SWALL:Q93AD8 (EMBL:AF422937) (401 aa) fasta scores: E(): 8.3e-72, 46.34% id in 397 aa.
     
 0.901
BPSS1886
Putative aromatic hydrocarbons catabolism-related dioxygenase; Similar to Pseudomonas aeruginosa naphthalene 1,2-dioxygenase system ferredoxin component NdoA or PahA2 SWALL:NDOA_PSEAE (SWALL:Q51493) (103 aa) fasta scores: E(): 2.8e-13, 44% id in 100 aa, and to Pseudomonas putida, and Pseudomonas sp. naphthalene 1,2-dioxygenase system ferredoxin component NdoA or NahAB or DoxA or NdoC1 SWALL:NDOA_PSEPU (SWALL:P23082) (103 aa) fasta scores: E(): 1.1e-12, 42.26% id in 97 aa.
     
  0.900
BPSS0486
N-terminal region similar to Streptomyces atroolivaceus non-ribosomal peptide synthetase SWALL:AAN85512 (EMBL:AF484556) (1745 aa) fasta scores: E(): 2.8e-67, 36.51% id in 838 aa, and C-terminal region similar to Pseudomonas aeruginosa probable acyl-CoA dehydrogenase pa1631 SWALL:Q9I391 (EMBL:AE004590) (384 aa) fasta scores: E(): 2e-23, 32.13% id in 361 aa.
  
 
 0.805
BPSL2229
Similar to Pseudomonas putida siderophore non-ribosomal peptide synthetase PpsD SWALL:Q9AKS6 (EMBL:AJ310530) (2246 aa) fasta scores: E(): 4.8e-102, 28.54% id in 2659 aa, and to the C-terminal region of Pseudomonas syringae syringomycin synthetase SyrE SWALL:O85168 (EMBL:AF047828) (9376 aa) fasta scores: E(): 1.5e-94, 27.02% id in 3648 aa.
  
 
0.676
BPSS1269
Putative peptide synthase/polyketide synthase; Similar to C-terminus of Aphanizomenon ovalisporum peptide synthetase AoaB SWALL:AAM33468 (EMBL:AF395828) (1869 aa) fasta scores: E(): 5.4e-125, 35.68% id in 1841 aa, and to C-terminus of Stigmatella aurantiaca MtaD SWALL:Q9RFK8 (EMBL:AF188287) (3291 aa) fasta scores: E(): 7.3e-124, 29.54% id in 3368 aa.
  
 
0.676
BPSS1008
Putative polyketide synthase; N-terminal region is similar to the the N-terminal region of Bacillus subtilis putative polyketide synthase PksK SWALL:PKSK_BACSU (SWALL:P40803) (4447 aa) fasta scores: E(): 1.1e-167, 38.79% id in 3439 aa. Internal region is similar to an internal region of Pseudomonas fluorescens MmpIV protein SWALL:Q8RL72 (EMBL:AF318063) (6521 aa) fasta scores: E(): 2.8e-41, 32.83% id in 4069 aa.
  
 
0.675
BPSL1424
Putative fatty acid degradation protein (possibly trifunctional); Similar to Ralstonia solanacearum probable trifunctional: enoyl-CoA hydratase and delta3-cis-delta2-trans-enoyl-CoA isomerase and 3-hydroxyacyl-CoA dehydrogenase oxidoreductase protein rsc1759 or rs02946 SWALL:Q8XYJ9 (EMBL:AL646066) (706 aa) fasta scores: E(): 2.4e-192, 74.6% id in 693 aa, and to Escherichia coli fatty oxidation complex alpha subunit [includes: enoyl-CoA hydratase; delta(3)-cis-delta(2)-trans-enoyl-CoA isomerase; 3-hydroxyacyl-CoA dehydrogenase; 3-hydroxybutyryl-CoA epimerase] FadB or OldB or b3846 SWALL [...]
 
 
 0.656
BPSS0487
Hypothetical protein; No significant database matches.
     
 0.655
Your Current Organism:
Burkholderia pseudomallei
NCBI taxonomy Id: 272560
Other names: B. pseudomallei K96243, Burkholderia pseudomallei K96243, Burkholderia pseudomallei str. K96243, Burkholderia pseudomallei strain K96243
Server load: low (14%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.