STRINGSTRING
BPSS0487 BPSS0487 BPSL0945 BPSL0945 BPSL0947 BPSL0947 BPSL3118 BPSL3118 BPSS0486 BPSS0486 BPSS0481 BPSS0481 BPSS2111 BPSS2111 BPSL0557 BPSL0557 BPSL0557A BPSL0557A BPSS0351 BPSS0351 BPSS0482 BPSS0482
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
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Textmining
[Homology]
Score
BPSS0487Hypothetical protein; No significant database matches. (711 aa)    
Predicted Functional Partners:
BPSL0945
Conserved hypothetical protein; Internal region is similar to an internal region of Escherichia coli type I restriction enzyme EcoR124II R protein HsdR or Hsr SWALL:T1R1_ECOLI (SWALL:P10486) (1033 aa) fasta scores: E(): 0.00016, 22.65% id in 693 aa. Full length CDS is similar to Xanthomonas axonopodis type I restriction-modification system endonuclease xac2898 SWALL:AAM37743 (EMBL:AE011932) (1084 aa) fasta scores: E(): 2e-86, 41.17% id in 1059 aa.
  
 
 0.900
BPSL0947
N-terminus is similar to the C-terminal region of Escherichia coli type I restriction enzyme EcoEI specificity protein HsdS or Hss SWALL:T1SE_ECOLI (SWALL:P19705) (594 aa) fasta scores: E(): 6.4e-07, 27.55% id in 196 aa. Full length CDS is similar to Methanosarcina mazei type I restriction-modification system specificity subunit mm2703 SWALL:AAM32399 (EMBL:AE013517) (440 aa) fasta scores: E(): 5.9e-20, 37.64% id in 178 aa.
  
 
 0.890
BPSL3118
Contains a region with similarity to type I restriction modification system methylases eg. Xanthomonas campestris XmnI methyltransferase Xcc4142 SWALL:AAM43363 (EMBL:AE012539) (487 aa) fasta scores: E(): 5.6e-08, 27.5% id in 440 aa, and Campylobacter jejuni restriction and modification enzyme CjeI SWALL:Q9JN06 (EMBL:AF264911) (1250 aa) fasta scores: E(): 0.00027, 20.59% id in 369 aa. CDS contain C-terminal imperfect repeat region with similarity to intergenic region between BSPL3111 and BPSL3113.
  
 
 0.890
BPSS0486
N-terminal region similar to Streptomyces atroolivaceus non-ribosomal peptide synthetase SWALL:AAN85512 (EMBL:AF484556) (1745 aa) fasta scores: E(): 2.8e-67, 36.51% id in 838 aa, and C-terminal region similar to Pseudomonas aeruginosa probable acyl-CoA dehydrogenase pa1631 SWALL:Q9I391 (EMBL:AE004590) (384 aa) fasta scores: E(): 2e-23, 32.13% id in 361 aa.
     
 0.748
BPSS0481
Putative CoA ligase; Similar to Azoarcus evansii 2-aminobenzoate-CoA ligase SWALL:Q93FC0 (EMBL:AF320253) (542 aa) fasta scores: E(): 2.6e-119, 57.35% id in 537 aa, and to Bacillus subtilis long-chain-fatty-acid--CoA ligase LcfA SWALL:LCFA_BACSU (SWALL:P94547) (560 aa) fasta scores: E(): 1.9e-31, 29.07% id in 564 aa.
     
 0.655
BPSS2111
Putative monooxygenase; Similar to Bradyrhizobium japonicum USDA 110 BLL2502 protein SWALL:Q89SA3 (EMBL:AP005944) (428 aa) fasta scores: E(): 9.2e-53, 42.39% id in 401 aa, and to Rhodopseudomonas palustris possible FAD-dependent monooxygenase SWALL:Q6N3V5 (EMBL:BX572604) (430 aa) fasta scores: E(): 2.6e-44, 37.79% id in 426 aa.
      
 0.630
BPSL0557
Hypothetical protein; No significant database matches. Doubtful CDS.
  
  
 0.540
BPSL0557A
Putative phage protein; Similar to internal regions of Chlorobium tepidum DNA helicase, putative SWALL:Q8KC08 (EMBL:AE012917) (1510 aa) fasta scores: E(): 1.3e-08, 76.59% id in 47 aa, and to Clostridium acetobutylicum superfamily I DNA helicase SWALL:Q97ES1 (EMBL:AE007800) (1351 aa) fasta scores: E(): 0.94, 50% id in 46 aa.
  
  
 0.540
BPSS0351
Putative copper-related MerR-family transcriptional regulator; Similar to Escherichia coli transcriptional regulator CueR or b0487 SWALL:CUER_ECOLI (SWALL:P77565) (135 aa) fasta scores: E(): 4.6e-18, 44.27% id in 131 aa, and to Rhizobium meliloti transcriptional regulator HmrR SWALL:HMRR_RHIME (SWALL:Q9X5X4) (147 aa) fasta scores: E(): 1.9e-30, 65.35% id in 127 aa.
   
 
 0.502
BPSS0482
Putative exported protein; Similar in its N-terminal region to Pseudomonas aeruginosa hypothetical protein pa0997 SWALL:Q9I4X2 (EMBL:AE004532) (283 aa) fasta scores: E(): 2.6e-08, 33.15% id in 190 aa and very low similarity also in its N-terminal region to Bacillus subtilis 3-oxoacyl-[acyl-carrier-protein] synthase III FabH SWALL:FABH_BACSU (SWALL:O34746) (312 aa) fasta scores: E(): 0.25, 27.27% id in 154 aa.
   
   0.483
Your Current Organism:
Burkholderia pseudomallei
NCBI taxonomy Id: 272560
Other names: B. pseudomallei K96243, Burkholderia pseudomallei K96243, Burkholderia pseudomallei str. K96243, Burkholderia pseudomallei strain K96243
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