STRINGSTRING
BPSS0516 BPSS0516 BPSS0517 BPSS0517 BPSS0515 BPSS0515 BPSS0518 BPSS0518 BPSS0114 BPSS0114 BPSS0176 BPSS0176 BPSS0098 BPSS0098 BPSS0172 BPSS0172 BPSS0523 BPSS0523 BPSS2099 BPSS2099 BPSL3106 BPSL3106
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BPSS0516Similar to Yersinia pestis hypothetical protein ypo0500 SWALL:Q8ZIJ8 (EMBL:AJ414143) (186 aa) fasta scores: E(): 5.8e-30, 55.76% id in 156 aa, and to Salmonella typhi hypothetical protein sty0297 SWALL:Q8Z970 (EMBL:AL627266) (180 aa) fasta scores: E(): 4.7e-28, 47.51% id in 181 aa. (182 aa)    
Predicted Functional Partners:
BPSS0517
Similar to Yersinia pestis hypothetical protein ypo0501 SWALL:Q8ZIJ7 (EMBL:AJ414143) (503 aa) fasta scores: E(): 5.4e-142, 65.66% id in 498 aa, and to Pseudomonas aeruginosa hypothetical protein pa0084 SWALL:Q9I748 (EMBL:AE004447) (498 aa) fasta scores: E(): 8e-133, 61.94% id in 494 aa.
 
 0.977
BPSS0515
Hypothetical protein; Weakly similar to Yersinia pestis hypothetical protein ypo0499 or y3676 SWALL:Q8ZIJ9 (EMBL:AJ414143) (337 aa) fasta scores: E(): 2.6e-05, 28.43% id in 313 aa, and to Xanthomonas axonopodis hypothetical protein xac4112 SWALL:Q8PF73 (EMBL:AE012060) (347 aa) fasta scores: E(): 0.084, 26.3% id in 346 aa.
 
  
 0.943
BPSS0518
Similar to Yersinia pestis hypothetical protein ypo0502 SWALL:Q8ZIJ6 (EMBL:AJ414143) (172 aa) fasta scores: E(): 1e-49, 72.09% id in 172 aa, and to Pseudomonas aeruginosa hypothetical protein pa0085 SWALL:Q9I747 (EMBL:AE004447) (162 aa) fasta scores: E(): 4.1e-13, 37.27% id in 169 aa.
 
 
 0.925
BPSS0114
Conserved hypothetical protein; Similar to Salmonella enterica subsp. enterica serovar Typhimurium SciE protein SWALL:Q93IT1 (EMBL:AJ320483) (279 aa) fasta scores: E(): 5.9e-38, 39.85% id in 276 aa, and to Yersinia pestis hypothetical protein ypo2727 or y1560 SWALL:Q8ZD65 (EMBL:AJ414153) (268 aa) fasta scores: E(): 8.6e-36, 39.36% id in 254 aa. Note: Also similar to BPSS0176 (322 aa) fasta scores: E(): 4.8e-29, 39.590% identity in 293 aa overlap.
 
   0.912
BPSS0176
Conserved hypothetical protein; Similar to Salmonella enterica subsp. enterica serovar Typhimurium SciE protein SWALL:Q93IT1 (EMBL:AJ320483) (279 aa) fasta scores: E(): 6.8e-24, 38.69% id in 292 aa, and to Pseudomonas aeruginosa hypothetical protein pa0086 SWALL:Q9I746 (EMBL:AE004447) (281 aa) fasta scores: E(): 8.4e-23, 37.5% id in 272 aa. Note: Also similar to BPSS0114 (285 aa) fasta scores: E(): 7.9e-24, 39.590% identity in 293 aa overlap.
 
   0.910
BPSS0098
Similar to Yersinia pestis hypothetical protein ypo2938 SWALL:Q8ZCP0 (EMBL:AJ414154) (500 aa) fasta scores: E(): 1.3e-175, 84.6% id in 500 aa, and to Salmonella enterica subsp. enterica serovar Typhimurium SciI protein SWALL:Q93IS7 (EMBL:AJ320483) (497 aa) fasta scores: E(): 9.3e-171, 83.36% id in 499 aa. Note: Also similar to BPSS0172 (500 aa) fasta scores: E(): 1.5e-182, 84.168% identity in 499 aa overlap.
 
 0.906
BPSS0172
Similar to Yersinia pestis hypothetical protein ypo2938 SWALL:Q8ZCP0 (EMBL:AJ414154) (500 aa) fasta scores: E(): 9.3e-166, 80.2% id in 500 aa, and to Salmonella enterica subsp. enterica serovar Typhimurium SciI protein SWALL:Q93IS7 (EMBL:AJ320483) (497 aa) fasta scores: E(): 4.6e-161, 78.49% id in 493 aa. Note: Also similar to BPSS0098 (500 aa) fasta scores: E(): 5.9e-182, 84.168% identity in 499 aa overlap.
 
 0.906
BPSS0523
Similar to Yersinia pestis hypothetical protein ypo0507 SWALL:Q8ZIJ1 (EMBL:AJ414143) (782 aa) fasta scores: E(): 1.4e-145, 58.14% id in 786 aa, and to Pseudomonas aeruginosa hypothetical protein pa0095 SWALL:Q9I737 (EMBL:AE004448) (741 aa) fasta scores: E(): 4.8e-63, 33.56% id in 733 aa. CDS is extended at the C-terminus in comparison to orthologues. Highly simlar to BPSS0524, 91.874% identity (91.995% ungapped) in 763 aa overlap.
 
  
 0.906
BPSS2099
Similar to Pseudomonas aeruginosa hypothetical protein pa0084 SWALL:Q9I748 (EMBL:AE004447) (498 aa) fasta scores: E(): 3.9e-153, 72.83% id in 497 aa, and to Yersinia pestis hypothetical protein ypo2938 SWALL:Q8ZCP0 (EMBL:AJ414154) (500 aa) fasta scores: E(): 7e-153, 72.52% id in 495 aa. Similar to BPSS0098, 73.642% identity (73.790% ungapped) in 497 aa overlap, and to BPSS0172, 72.233% identity (72.672% ungapped) in 497 aa overlap, and to BPSS0517, 61.290% identity (61.414% ungapped) in 496 aa overlap.
 
 0.906
BPSL3106
Similar to Ralstonia solanacearum hypothetical protein Rsp0744 or Rs01964 SWALL:Q8XRT7 (EMBL:AL646080) (496 aa) fasta scores: E(): 9.4e-175, 86.26% id in 495 aa, and to Rhizobium leguminosarum ImpC SWALL:Q93ED1 (EMBL:AF361470) (493 aa) fasta scores: E(): 3.2e-102, 51.41% id in 496 aa.
 
 0.905
Your Current Organism:
Burkholderia pseudomallei
NCBI taxonomy Id: 272560
Other names: B. pseudomallei K96243, Burkholderia pseudomallei K96243, Burkholderia pseudomallei str. K96243, Burkholderia pseudomallei strain K96243
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