STRINGSTRING
BPSS0521 BPSS0521 BPSS0523 BPSS0523 BPSS0520 BPSS0520 BPSS0518 BPSS0518 BPSS0515 BPSS0515 BPSS0516 BPSS0516 BPSS0524 BPSS0524 BPSS0517 BPSS0517 BPSS2101 BPSS2101 BPSS0530 BPSS0530 BPSS0097 BPSS0097
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BPSS0521Similar to Yersinia pestis hypothetical protein ypo0505 SWALL:Q8ZIJ3 (EMBL:AJ414143) (327 aa) fasta scores: E(): 4.8e-37, 36.41% id in 335 aa. Weakly similar to Pseudomonas aeruginosa hypothetical protein pa0089 SWALL:Q9I743 (EMBL:AE004447) (348 aa) fasta scores: E(): 5.4e-15, 28.34% id in 321 aa. (329 aa)    
Predicted Functional Partners:
BPSS0523
Similar to Yersinia pestis hypothetical protein ypo0507 SWALL:Q8ZIJ1 (EMBL:AJ414143) (782 aa) fasta scores: E(): 1.4e-145, 58.14% id in 786 aa, and to Pseudomonas aeruginosa hypothetical protein pa0095 SWALL:Q9I737 (EMBL:AE004448) (741 aa) fasta scores: E(): 4.8e-63, 33.56% id in 733 aa. CDS is extended at the C-terminus in comparison to orthologues. Highly simlar to BPSS0524, 91.874% identity (91.995% ungapped) in 763 aa overlap.
 
  
 0.956
BPSS0520
Similar to Yersinia pestis hypothetical protein ypo0504 SWALL:Q8ZIJ4 (EMBL:AJ414143) (614 aa) fasta scores: E(): 5.2e-60, 33.98% id in 612 aa, and to Pseudomonas aeruginosa hypothetical protein pa0088 SWALL:Q9I744 (EMBL:AE004447) (619 aa) fasta scores: E(): 1.3e-39, 31.38% id in 615 aa.
 
  
 0.951
BPSS0518
Similar to Yersinia pestis hypothetical protein ypo0502 SWALL:Q8ZIJ6 (EMBL:AJ414143) (172 aa) fasta scores: E(): 1e-49, 72.09% id in 172 aa, and to Pseudomonas aeruginosa hypothetical protein pa0085 SWALL:Q9I747 (EMBL:AE004447) (162 aa) fasta scores: E(): 4.1e-13, 37.27% id in 169 aa.
 
  
 0.925
BPSS0515
Hypothetical protein; Weakly similar to Yersinia pestis hypothetical protein ypo0499 or y3676 SWALL:Q8ZIJ9 (EMBL:AJ414143) (337 aa) fasta scores: E(): 2.6e-05, 28.43% id in 313 aa, and to Xanthomonas axonopodis hypothetical protein xac4112 SWALL:Q8PF73 (EMBL:AE012060) (347 aa) fasta scores: E(): 0.084, 26.3% id in 346 aa.
 
  
 0.912
BPSS0516
Similar to Yersinia pestis hypothetical protein ypo0500 SWALL:Q8ZIJ8 (EMBL:AJ414143) (186 aa) fasta scores: E(): 5.8e-30, 55.76% id in 156 aa, and to Salmonella typhi hypothetical protein sty0297 SWALL:Q8Z970 (EMBL:AL627266) (180 aa) fasta scores: E(): 4.7e-28, 47.51% id in 181 aa.
 
  
 0.898
BPSS0524
Similar to Yersinia pestis hypothetical protein ypo0507 SWALL:Q8ZIJ1 (EMBL:AJ414143) (782 aa) fasta scores: E(): 1.1e-143, 57.7% id in 785 aa, and to Pseudomonas aeruginosa hypothetical protein pa0095 SWALL:Q9I737 (EMBL:AE004448) (741 aa) fasta scores: E(): 1.3e-60, 33.6% id in 735 aa. Highly similar to BPSS0523, 91.874% identity (91.995% ungapped) in 763 aa overlap.
 
  
 0.896
BPSS0517
Similar to Yersinia pestis hypothetical protein ypo0501 SWALL:Q8ZIJ7 (EMBL:AJ414143) (503 aa) fasta scores: E(): 5.4e-142, 65.66% id in 498 aa, and to Pseudomonas aeruginosa hypothetical protein pa0084 SWALL:Q9I748 (EMBL:AE004447) (498 aa) fasta scores: E(): 8e-133, 61.94% id in 494 aa.
 
  
 0.886
BPSS2101
Similar to Xanthomonas axonopodis hypothetical protein Xac4112 SWALL:AAM38947 (EMBL:AE012060) (347 aa) fasta scores: E(): 5.7e-23, 38.96% id in 367 aa, and to Pseudomonas aeruginosa hypothetical protein Pa0082 SWALL:Q9I750 (EMBL:AE004447) (344 aa) fasta scores: E(): 3.8e-18, 35.79% id in 366 aa, and to Salmonella typhimurium, and Salmonella enterica subsp. enterica serovar Typhimurium putative cytoplasmic protein stm0266 or sciA SWALL:Q93IT5 (EMBL:AE008707) (351 aa) fasta scores: E(): 1.4e-13, 31.94% id in 360 aa.
 
  
 0.873
BPSS0530
Similar to Yersinia pestis hypothetical protein ypo0513 SWALL:Q8ZII4 (EMBL:AJ414143) (451 aa) fasta scores: E(): 5.3e-66, 41.2% id in 449 aa, and to Pseudomonas aeruginosa hypothetical protein pa0079 SWALL:Q9I753 (EMBL:AE004447) (444 aa) fasta scores: E(): 1.5e-46, 35.21% id in 443 aa.
 
  
 0.843
BPSS0097
Similar to Yersinia pestis hypothetical protein ypo2939 SWALL:Q8ZCN9 (EMBL:AJ414154) (174 aa) fasta scores: E(): 2.4e-48, 84.75% id in 164 aa, and to Salmonella typhi hypothetical protein sty0297 SWALL:Q8Z970 (EMBL:AL627266) (180 aa) fasta scores: E(): 6.7e-48, 76.66% id in 180 aa. Note: Also similar to BPSS0173 (194 aa) fasta scores: E(): 2e-48, 81.818% identity in 165 aa overlap.
 
  
 0.842
Your Current Organism:
Burkholderia pseudomallei
NCBI taxonomy Id: 272560
Other names: B. pseudomallei K96243, Burkholderia pseudomallei K96243, Burkholderia pseudomallei str. K96243, Burkholderia pseudomallei strain K96243
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