STRINGSTRING
BPSS0525 BPSS0525 BPSS0528 BPSS0528 BPSS0524 BPSS0524 BPSS0526 BPSS0526 BPSS0184 BPSS0184 BPSS0185 BPSS0185 BPSS0527 BPSS0527 BPSS1505 BPSS1505 BPSS1507 BPSS1507 BPSS0531 BPSS0531 BPSS0530 BPSS0530
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BPSS0525Hypothetical protein; No significant database matches to the full length CDS. N-terminal region is similar to Yersinia pestis hypothetical protein ypo0508 SWALL:Q8ZIJ0 (EMBL:AJ414143) (190 aa) fasta scores: E(): 4.9e-08, 30.6% id in 183 aa. Internal region is similar to Yersinia pestis hypothetical protein ypo0509 SWALL:Q8ZII9 (EMBL:AJ414143) (540 aa) fasta scores: E(): 4.2e-21, 24.13% id in 547 aa. C-terminal region is similar to to Yersinia pestis hypothetical protein ypo0510 SWALL:Q8ZII8 (EMBL:AJ414143) (367 aa) fasta scores: E(): 0.00034, 18.62% id in 247 aa. (738 aa)    
Predicted Functional Partners:
BPSS0528
Similar to Yersinia pestis hypothetical protein ypo0511a SWALL:Q8ZII6 (EMBL:AJ414143) (121 aa) fasta scores: E(): 1.1e-09, 44.14% id in 111 aa. Similar to BPSS0185, 55.556% identity (56.075% ungapped) in 108 aa overlap.
 
  
 0.922
BPSS0524
Similar to Yersinia pestis hypothetical protein ypo0507 SWALL:Q8ZIJ1 (EMBL:AJ414143) (782 aa) fasta scores: E(): 1.1e-143, 57.7% id in 785 aa, and to Pseudomonas aeruginosa hypothetical protein pa0095 SWALL:Q9I737 (EMBL:AE004448) (741 aa) fasta scores: E(): 1.3e-60, 33.6% id in 735 aa. Highly similar to BPSS0523, 91.874% identity (91.995% ungapped) in 763 aa overlap.
 
  
 0.856
BPSS0526
Hypothetical protein; Weakly similar to Chlorobium tepidum pentapeptide repeat family protein CT0918 SWALL:AAM72153 (EMBL:AE012857) (382 aa) fasta scores: E(): 0.06, 19.69% id in 325 aa.
 
    
0.846
BPSS0184
Hypothetical protein; No significant database matches.
 
     0.808
BPSS0185
Similar to Yersinia pestis hypothetical protein ypo0511a or y3662 SWALL:Q8ZII6 (EMBL:AJ414143) (121 aa) fasta scores: E(): 2e-08, 40.17% id in 117 aa.
 
  
 0.802
BPSS0527
Hypothetical protein; Possible alternative translational start site. C-terminal region is weakly similar to Yersinia pestis hypothetical protein ypo0511 SWALL:Q8ZII7 (EMBL:AJ414143) (205 aa) fasta scores: E(): 0.0008, 25.74% id in 202 aa.
       0.773
BPSS1505
Hypothetical protein; N-terminal region is weakly similar to Synechocystis sp. hypothetical protein SLR1819 SWALL:YI19_SYNY3 (SWALL:P73709) (331 aa) fasta scores: E(): 1.1e-15, 28.8% id in 309 aa.
 
     0.766
BPSS1507
Hypothetical protein; Weakly similar to Yersinia pestis hypothetical protein ypo0511a or y3662 SWALL:Q8ZII6 (EMBL:AJ414143) (121 aa) fasta scores: E(): 0.57, 28.84% id in 104 aa.
 
  
 0.765
BPSS0531
Similar to Yersinia pestis putative OmpA-family membrane protein ypo0514 SWALL:Q8ZII3 (EMBL:AJ414143) (536 aa) fasta scores: E(): 5.4e-45, 36.23% id in 505 aa. Internal region is weakly similar to Salmonella typhi putative membrane protein sty0305 SWALL:Q8Z965 (EMBL:AL627266) (433 aa) fasta scores: E(): 3.5e-13, 28.31% id in 445 aa. CDS is extended at the C-terminus in comparison to similar proteins.
  
    0.694
BPSS0530
Similar to Yersinia pestis hypothetical protein ypo0513 SWALL:Q8ZII4 (EMBL:AJ414143) (451 aa) fasta scores: E(): 5.3e-66, 41.2% id in 449 aa, and to Pseudomonas aeruginosa hypothetical protein pa0079 SWALL:Q9I753 (EMBL:AE004447) (444 aa) fasta scores: E(): 1.5e-46, 35.21% id in 443 aa.
  
    0.686
Your Current Organism:
Burkholderia pseudomallei
NCBI taxonomy Id: 272560
Other names: B. pseudomallei K96243, Burkholderia pseudomallei K96243, Burkholderia pseudomallei str. K96243, Burkholderia pseudomallei strain K96243
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