STRINGSTRING
BPSS0687 BPSS0687 BPSS0688 BPSS0688 BPSL2299 BPSL2299 BPSS0630 BPSS0630 BPSL2065 BPSL2065 BPSL0040 BPSL0040 BPSS0705 BPSS0705 BPSL1669 BPSL1669 BPSL1036 BPSL1036 BPSS1494 BPSS1494 BPSL2068 BPSL2068
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
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Textmining
[Homology]
Score
BPSS0687Similar to Escherichia coli sensor protein RstB or UspT SWALL:RSTB_ECOLI (SWALL:P18392) (433 aa) fasta scores: E(): 3.3e-37, 33.63% id in 437 aa, and to Ralstonia solanacearum probable transmembrane sensor histidine kinase transcription regulator protein rsc3063 or rs00507 SWALL:Q8XUX0 (EMBL:AL646073) (433 aa) fasta scores: E(): 1.9e-84, 55.88% id in 433 aa. (442 aa)    
Predicted Functional Partners:
BPSS0688
Response regulator protein; Similar to Escherichia coli transcriptional regulatory protein RstA or UrpT SWALL:RSTA_ECOLI (SWALL:P52108) (242 aa) fasta scores: E(): 1.3e-32, 42.61% id in 237 aa, and to Ralstonia solanacearum probable response regulator transcription regulator protein rsc3064 or rs00508 SWALL:Q8XUW9 (EMBL:AL646073) (243 aa) fasta scores: E(): 5.1e-78, 83.12% id in 243 aa.
 
 
 0.979
BPSL2299
Putative dihydrolipoamide dehydrogenase; C-terminal region is similar to Escherichia coli, Escherichia coli O6, and Escherichia coli O157:H7 dihydrolipoamide dehydrogenase LpdA or Lpd SWALL:DLDH_ECOLI (SWALL:P00391) (473 aa) fasta scores: E(): 1.9e-93, 65.75% id in 473 aa. Full length CDS is similar to Ralstonia solanacearum probable dihydrolipoamide dehydrogenase rsc1603 or rs03965 SWALL:Q8XZ03 (EMBL:AL646065) (594 aa) fasta scores: E(): 2.1e-142, 76.88% id in 597 aa.
    
 0.867
BPSS0630
Response regulator protein; Similar to Escherichia coli, Salmonella typhimurium, Salmonella typhi and Shigella flexneri transcriptional regulatory protein OmpR SWALL:OMPR_ECOLI (SWALL:P03025) (239 aa) fasta scores: E(): 7.1e-29, 43.53% id in 232 aa, and to Pseudomonas aeruginosa probable two-component response regulator pa1157 SWALL:Q9I4I0 (EMBL:AE004546) (236 aa) fasta scores: E(): 5.4e-43, 54.14% id in 229 aa.
 
 
 0.832
BPSL2065
Putative two component system, response regulator; Similar to Bacillus subtilis alkaline phosphatase synthesis transcriptional regulatory protein PhoP SWALL:PHOP_BACSU (SWALL:P13792) (240 aa) fasta scores: E(): 2.7e-21, 34.91% id in 232 aa, and to Ralstonia solanacearum probable two-component system response regulator transcription regulator protein rsc1073 or rs04004 SWALL:Q8Y0H1 (EMBL:AL646062) (237 aa) fasta scores: E(): 4.6e-29, 39.91% id in 228 aa.
 
 
 0.818
BPSL0040
Two-component regulatory system family, response regulator protein. Similar to Salmonella typhimurium transcriptional regulatory protein TctD SWALL:TCTD_SALTY (SWALL:P22104) (224 aa) fasta scores: E(): 2.9e-35, 48.43% id in 223 aa, and to Ralstonia solanacearum probable response regulator transcription regulator protein rsc3392 or rs05673 SWALL:Q8XU02 (EMBL:AL646075) (224 aa) fasta scores: E(): 1.5e-47, 58.44% id in 219 aa.
 
 
 0.817
BPSS0705
Response regulator protein; Similar to Escherichia coli transcriptional regulatory protein QseB SWALL:QSEB_ECOLI (SWALL:P52076) (219 aa) fasta scores: E(): 4.3e-28, 42.2% id in 218 aa, and to Ralstonia solanacearum probable two-component response regulator transcription regulator protein rsc1736 or rs02924 SWALL:Q8XYM2 (EMBL:AL646066) (230 aa) fasta scores: E(): 4.2e-59, 72.97% id in 222 aa. Similar to BPSL0775, 55.263% identity (55.507% ungapped) in 228 aa overlap.
 
 
 0.816
BPSL1669
Putative transposase protein (fragment); Similar to internal regions of Ralstonia solanacearum ISRso5-transposase protein TISRso5 SWALL:Q8Y371 (EMBL:AL646057) (363 aa) fasta scores: E(): 4.4e-07, 79.41% id in 34 aa, and to Agrobacterium tumefaciens transposase Orf1 SWALL:Q44454 (EMBL:Z18270) (366 aa) fasta scores: E(): 0.18, 54.54% id in 33 aa.
 
 
 0.809
BPSL1036
Putative two-component system, response regulator; Similar to Escherichia coli, Escherichia coli O157:H7, Salmonella typhimurium, and Salmonella typhi transcriptional regulatory protein OmpR SWALL:OMPR_ECOLI (SWALL:P03025) (239 aa) fasta scores: E(): 5.3e-42, 52.15% id in 232 aa, and to Ralstonia solanacearum probable two component response regulator transcription regulator protein rsp1196 or rs03140 SWALL:Q8XQM6 (EMBL:AL646083) (245 aa) fasta scores: E(): 7.1e-56, 63.33% id in 240 aa.
 
 
 0.804
BPSS1494
Putative two-component response regulator protein; Similar to Rhizobium sp LcrB protein SWALL:Q53167 (EMBL:M38698) (238 aa) fasta scores: E(): 9.9e-34, 43.16% id in 234 aa, and to Agrobacterium tumefaciens Tiorf152 protein SWALL:BAA87777 (EMBL:AB016260) (253 aa) fasta scores: E(): 3.5e-32, 41% id in 239 aa, and to Agrobacterium tumefaciens regulatory protein VirG or atu6178 or agr_pti_15 SWALL:VIRG_AGRT5 (SWALL:P07545) (253 aa) fasta scores: E(): 3.5e-32, 41% id in 239 aa.
 
 
 0.803
BPSL2068
Putative two component system, response regulator; Similar to Escherichia coli, and Escherichia coli O157:H7 phosphate regulon transcriptional regulatory protein PhoB or b0399 or z0497 or ecs0449 SWALL:PHOB_ECOLI (SWALL:P08402) (229 aa) fasta scores: E(): 6.6e-19, 31.41% id in 226 aa, and to Ralstonia solanacearum probable two-component system response regulator transcription regulator protein rsc1073 or rs04004 SWALL:Q8Y0H1 (EMBL:AL646062) (237 aa) fasta scores: E(): 4.2e-24, 34.97% id in 223 aa. Note: Also similar to the downstream CDS BPSL2065 (237 aa) fasta scores: E(): 7.1e-34, 45 [...]
 
 
 0.800
Your Current Organism:
Burkholderia pseudomallei
NCBI taxonomy Id: 272560
Other names: B. pseudomallei K96243, Burkholderia pseudomallei K96243, Burkholderia pseudomallei str. K96243, Burkholderia pseudomallei strain K96243
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