STRINGSTRING
BPSS0772 BPSS0772 BPSS0995 BPSS0995 BPSS1391 BPSS1391 BPSS1610 BPSS1610 BPSS0783 BPSS0783 BPSS0135 BPSS0135 BPSL1996 BPSL1996 phnF phnF phnN phnN BPSL3098 BPSL3098 phnC phnC
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
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Textmining
[Homology]
Score
BPSS0772MarR family regulatory protein; Similar to Ralstonia solanacearum probable transcription regulator protein rsp0224 or rs05199 SWALL:Q8XT91 (EMBL:AL646077) (154 aa) fasta scores: E(): 3.9e-21, 45.75% id in 153 aa. Weakly similar to Salmonella typhimurium multiple antibiotic resistance protein MarR SWALL:MARR_SALTY (SWALL:Q56069) (144 aa) fasta scores: E(): 0.0013, 30.18% id in 106 aa. (160 aa)    
Predicted Functional Partners:
BPSS0995
Similar to Ralstonia solanacearum regulatory protein HrpB SWALL:HRPB_RALSO (SWALL:P31778) (477 aa) fasta scores: E(): 4.3e-42, 31.48% id in 486 aa, and to Burkholderia pseudomallei hypothetical protein SWALL:Q93L01 (EMBL:AF074878) (483 aa) fasta scores: E(): 5.7e-61, 39.47% id in 494 aa. CDS is extended at the C-terminus in comparison to orthologues.
  
    0.723
BPSS1391
Putative AraC family regulator of pathogenicity genes; Similar to Ralstonia solanacearum regulatory protein HrpB or rsp0873 or rs01644 SWALL:HRPB_RALSO (SWALL:P31778) (477 aa) fasta scores: E(): 5.6e-49, 34.35% id in 492 aa. Almost identical to the previously sequenced Burkholderia pseudomallei hypothetical 54.7 kDa protein SWALL:Q93L01 (EMBL:AF074878) (483 aa) fasta scores: E(): 4.9e-195, 99.58% id in 483 aa.
  
    0.703
BPSS1610
AraC-family transcriptional regulator; Similar to Ralstonia solanacearum regulatory protein HrpB or rsp0873 or rs01644 SWALL:HRPB_RALSO (SWALL:P31778) (477 aa) fasta scores: E(): 1e-53, 37.65% id in 486 aa, and to Burkholderia pseudomallei hypothetical 54.7 kDa protein SWALL:Q93L01 (EMBL:AF074878) (483 aa) fasta scores: E(): 2.9e-59, 41.17% id in 493 aa.
  
    0.695
BPSS0783
Similar to Bordetella pertussis outer membrane porin protein precursor SWALL:OMP_BORPE (SWALL:Q04064) (385 aa) fasta scores: E(): 7.5e-13, 32.93% id in 413 aa, and to Ralstonia solanacearum probable porin signal peptide protein rsp1594 or rs02151 SWALL:Q8XPP4 (EMBL:AL646085) (374 aa) fasta scores: E(): 8.3e-78, 57.75% id in 374 aa.
  
     0.683
BPSS0135
Similar to Ralstonia solanacearum hypothetical protein rsp1479 or rs03064 SWALL:Q8XQ07 (EMBL:AL646085) (150 aa) fasta scores: E(): 2e-17, 45.86% id in 133 aa.
  
     0.611
BPSL1996
Putative amine catabolism-related protein; Similar to Yersinia pestis hypothetical protein ypo2586 SWALL:Q8ZDI2 (EMBL:AJ414152) (306 aa) fasta scores: E(): 3e-62, 56.94% id in 288 aa, and to Rhizobium meliloti rhizopine catabolism protein MocC SWALL:MOCC_RHIME (SWALL:P49304) (325 aa) fasta scores: E(): 1.1e-54, 50.85% id in 291 aa.
      
 0.573
phnF
Putative GntR family transcriptional regulator; Similar to Escherichia coli probable transcriptional regulator PhnF or b4102 SWALL:PHNF_ECOLI (SWALL:P16684) (241 aa) fasta scores: E(): 4.1e-11, 32.07% id in 212 aa, and to Rhizobium loti transcriptional regulator mll3341 SWALL:Q98GG5 (EMBL:AP003001) (249 aa) fasta scores: E(): 1.1e-24, 41.42% id in 239 aa, and to Rhizobium meliloti hypothetical transcriptional regulator Rb1450 or smb20758 SWALL:YPF0_RHIME (SWALL:O86029) (243 aa) fasta scores: E(): 1.7e-24, 38.23% id in 238 aa, and to Agrobacterium tumefaciens transcriptional regulator, [...]
   
  
 0.502
phnN
Putative ATP-binding protein PhnN; Catalyzes the phosphorylation of ribose 1,5-bisphosphate to 5-phospho-D-ribosyl alpha-1-diphosphate (PRPP).
      
 0.499
BPSL3098
Similar to Ralstonia solanacearum hypothetical protein Rsp0762 or Rs01946 SWALL:Q8XRR9 (EMBL:AL646080) (328 aa) fasta scores: E(): 3.3e-81, 61.28% id in 328 aa.
  
     0.498
phnC
Putative phosphonates transport ATP-binding protein PhnC; Part of the ABC transporter complex PhnCDE involved in phosphonates import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Phosphonates importer (TC 3.A.1.9.1) family.
      
 0.493
Your Current Organism:
Burkholderia pseudomallei
NCBI taxonomy Id: 272560
Other names: B. pseudomallei K96243, Burkholderia pseudomallei K96243, Burkholderia pseudomallei str. K96243, Burkholderia pseudomallei strain K96243
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