STRINGSTRING
BPSS0839 BPSS0839 BPSS0837 BPSS0837 BPSL1406 BPSL1406 BPSS0838 BPSS0838 BPSS0840 BPSS0840 BPSS2283 BPSS2283
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BPSS0839Similar to Ralstonia solanacearum hypothetical protein rsc0185 or rs00616 SWALL:Q8Y2Z6 (EMBL:AL646057) (279 aa) fasta scores: E(): 5.5e-39, 42.14% id in 280 aa, and to Rhizobium loti hypothetical protein mll0142 SWALL:Q98NH2 (EMBL:AP002994) (277 aa) fasta scores: E(): 1.6e-23, 33.33% id in 285 aa. (279 aa)    
Predicted Functional Partners:
BPSS0837
Similar to Ralstonia solanacearum hypothetical protein rsc0185 or rs00616 SWALL:Q8Y2Z6 (EMBL:AL646057) (279 aa) fasta scores: E(): 5e-29, 35.56% id in 284 aa, and to Bradyrhizobium japonicum hypothetical protein SWALL:Q03082 (EMBL:L07487) (277 aa) fasta scores: E(): 1.5e-24, 38.24% id in 285 aa.
 
    
0.550
BPSL1406
Hypothetical protein; No significant database matches.
 
  
 0.514
BPSS0838
Universal stress protein; Similar to Ralstonia solanacearum hypothetical protein rsp1561 or rs02117 SWALL:Q8XPS7 (EMBL:AL646085) (151 aa) fasta scores: E(): 3.7e-18, 46.75% id in 154 aa, and to Ralstonia solanacearum hypothetical protein rsc0184 or rs00615 SWALL:Q8Y2Z7 (EMBL:AL646057) (166 aa) fasta scores: E(): 2.3e-16, 41.61% id in 161 aa.
       0.461
BPSS0840
Similar to Bacillus subtilis sorbitol dehydrogenase GutB SWALL:DHSO_BACSU (SWALL:Q06004) (352 aa) fasta scores: E(): 1.1e-25, 30.25% id in 347 aa, and to Ralstonia solanacearum probable zinc-dependent alcohol dehydrogenase oxidoreductase protein rsc0194 or rs00626 SWALL:Q8Y2Y7 (EMBL:AL646058) (345 aa) fasta scores: E(): 1.1e-97, 73.46% id in 343 aa.
  
    0.456
BPSS2283
Similar to Chlorobium tepidum hypothetical protein ct0831 SWALL:AAM72067 (EMBL:AE012850) (515 aa) fasta scores: E(): 3e-53, 37.37% id in 495 aa, and to Pseudomonas aeruginosa hypothetical protein pa4701 SWALL:Q9HV96 (EMBL:AE004884) (520 aa) fasta scores: E(): 4.6e-49, 36.63% id in 505 aa. CDS is extended at the N-terminus in comparison to orthologues.
 
    0.425
Your Current Organism:
Burkholderia pseudomallei
NCBI taxonomy Id: 272560
Other names: B. pseudomallei K96243, Burkholderia pseudomallei K96243, Burkholderia pseudomallei str. K96243, Burkholderia pseudomallei strain K96243
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