STRINGSTRING
BPSS0897 BPSS0897 BPSS0896 BPSS0896 BPSS0898 BPSS0898 BPSS0905 BPSS0905 BPSS0899 BPSS0899 BPSS0902 BPSS0902 BPSL1953 BPSL1953 BPSS0901 BPSS0901 BPSS0039 BPSS0039 BPSS0900 BPSS0900 nadX nadX
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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[Homology]
Score
BPSS0897Putative short chain dehydrogenase; Similar to Pseudomonas paucimobilis 2,5-dichloro-2,5-cyclohexadiene-1,4-diol dehydrogenase LinX SWALL:LINX_PSEPA (SWALL:P50198) (250 aa) fasta scores: E(): 1.7e-23, 37.39% id in 246 aa, and to Pseudomonas aeruginosa probable short-chain dehydrogenase pa3511 SWALL:Q9HY98 (EMBL:AE004771) (253 aa) fasta scores: E(): 4.3e-50, 62% id in 250 aa. (252 aa)    
Predicted Functional Partners:
BPSS0896
Rieske [2Fe-2S] domain protein; Similar to Pseudomonas sp. vanillate O-demethylase oxygenase subunit VanA SWALL:VANA_PSESP (SWALL:O05616) (354 aa) fasta scores: E(): 4e-18, 30.44% id in 358 aa, and to Acinetobacter sp. ADP1 hypothetical protein SWALL:O24847 (EMBL:AF009672) (316 aa) fasta scores: E(): 2.1e-88, 62.97% id in 316 aa.
 
     0.894
BPSS0898
Similar to Pseudomonas aeruginosa hypothetical protein pa3510 SWALL:Q9HY99 (EMBL:AE004771) (176 aa) fasta scores: E(): 5.9e-50, 71.25% id in 167 aa, and to Rhodococcus sp. hypothetical protein SWALL:BAC00796 (EMBL:AB070454) (171 aa) fasta scores: E(): 1.2e-24, 49.36% id in 158 aa.
 
     0.864
BPSS0905
Glyoxalase/bleomycin resistance protein/dioxygenase superfamily protein; C-terminal region is similar to Pseudomonas aeruginosa hypothetical protein pa3503 SWALL:Q9HYA6 (EMBL:AE004770) (211 aa) fasta scores: E(): 1.1e-60, 67.3% id in 208 aa. Full length CDS is weakly similar to Pseudomonas aeruginosa putative dioxygenase SWALL:O87625 (EMBL:AF087482) (309 aa) fasta scores: E(): 8.8e-13, 28.28% id in 297 aa. N-terminus is weakly similar to the N-terminal region of Rhodococcus rhodochrous metapyrocatechase CatA SWALL:CATA_RHORH (SWALL:Q53034) (318 aa) fasta scores: E(): 9.8e-05, 27.79% id [...]
 
    0.796
BPSS0899
Putative hydrolase; Similar to Pseudomonas aeruginosa probable hydrolase pa3509 SWALL:Q9HYA0 (EMBL:AE004771) (289 aa) fasta scores: E(): 6e-33, 44.76% id in 277 aa, and to Agrobacterium tumefaciens hydrolase ATU4238 or AGR_L_1247 SWALL:Q8U861 (EMBL:AE009353) (286 aa) fasta scores: E(): 1.9e-10, 29.89% id in 291 aa.
 
   0.787
BPSS0902
Putative thiamine pyrophosphate enzyme; Similar to Pseudomonas aeruginosa probable decarboxylase pa3506 SWALL:Q9HYA3 (EMBL:AE004771) (560 aa) fasta scores: E(): 1.8e-134, 66.13% id in 561 aa. Weakly similar to Escherichia coli acetolactate synthase isozyme I large subunit IlvB SWALL:ILVB_ECOLI (SWALL:P08142) (562 aa) fasta scores: E(): 1.8e-32, 28.57% id in 532 aa; Belongs to the TPP enzyme family.
 
  0.780
BPSL1953
Putative dehydrogenase; Similar to Rhizobium loti probable acyl-carrier protein reductase mlr2047 SWALL:Q98J89 (EMBL:AP002998) (242 aa) fasta scores: E(): 4.3e-28, 42.85% id in 238 aa, and to Streptomyces coelicolor putative oxidoreductase sco1831 or sci8.16 SWALL:Q9RJ37 (EMBL:AL132644) (251 aa) fasta scores: E(): 7.2e-15, 36.14% id in 249 aa.
  
     0.760
BPSS0901
Putative short chain dehydrogenase; Similar to Streptomyces cinnamonensis monensin polyketide synthase putative ketoacyl reductase SWALL:DHKR_STRCM (SWALL:P41177) (261 aa) fasta scores: E(): 8.2e-19, 34.88% id in 258 aa, and to Pseudomonas aeruginosa probable short-chain dehydrogenase pa3507 SWALL:Q9HYA2 (EMBL:AE004771) (265 aa) fasta scores: E(): 2.4e-60, 61.74% id in 264 aa.
 
    
0.756
BPSS0039
Putative dehydrogenase; Similar to Synechocystis sp. 3-oxoacyl-[acyl-carrier protein] reductase 1 slr0886 SWALL:FAG1_SYNY3 (SWALL:P73574) (247 aa) fasta scores: E(): 2.5e-17, 37.55% id in 245 aa, and to Ralstonia solanacearum putative oxidoreductase protein rsc0156 or rs01026 SWALL:Q8Y325 (EMBL:AL646057) (267 aa) fasta scores: E(): 5.9e-28, 41.66% id in 264 aa.
  
     0.748
BPSS0900
IclR family regulatory protein; Similar to Pseudomonas aeruginosa probable transcriptional regulator pa3508 SWALL:Q9HYA1 (EMBL:AE004771) (277 aa) fasta scores: E(): 6.5e-43, 49.62% id in 268 aa, and weakly similar to Pseudomonas putida Pca regulon regulatory protein PcaR SWALL:PCAR_PSEPU (SWALL:Q52154) (291 aa) fasta scores: E(): 1.4e-12, 26.37% id in 254 aa. Similar to BPSS0892, 64.184% identity (65.108% ungapped) in 282 aa overlap.
 
    0.735
nadX
Conserved hypothetical protein; Specifically catalyzes the NAD or NADP-dependent dehydrogenation of L-aspartate to iminoaspartate.
 
     0.720
Your Current Organism:
Burkholderia pseudomallei
NCBI taxonomy Id: 272560
Other names: B. pseudomallei K96243, Burkholderia pseudomallei K96243, Burkholderia pseudomallei str. K96243, Burkholderia pseudomallei strain K96243
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